SGB - The Spirochetes Genome Browser - Gene list

Title

+ Borrelia afzelii, PKo

+ Borrelia burgdorferi ZS7, ZS7

+ Borrelia burgdorferi, B31

+ Borrelia duttonii Ly, Ly

+ Borrelia garinii High passage (300), PBi

+ Borrelia garinii, PBi

+ Borrelia hermsii DAH, DAH

+ Borrelia recurrentis A1, A1

+ Borrelia turicatae 91E135, 91E135

+ Leptospira biflexa serovar Patoc strain Patoc 1 (Ames), Patoc 1 (Ames)

+ Leptospira biflexa serovar Patoc strain Patoc 1 (Paris), Patoc 1 (Paris)

+ Leptospira borgpetersenii serovar Hardjo-bovis JB197, JB197

+ Leptospira borgpetersenii serovar Hardjo-bovis L550, L550

+ Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130

+ Leptospira interrogans serovar lai str. 56601

+ Treponema denticola ATCC 35405

+ Treponema pallidum

+ Treponema pallidum subsp. pallidum SS14, SS14

+ COG functional categories

+ (Clickable) linear whole genome views

+ Horizontal gene transfer (predicted by SIGI-HMM)

+ Sequence retrieval

+ Advanced search

+ Sequence similarity search

+ Best bidirectional hits (protein-based analysis)

+ Gene core sets (protein-based analysis)

+ Gene partnerships (DNA-based analysis)

+ Protein variations (protein-based analysis)

+ Synteny analysis (protein-based analysis)

+ Gene conservation (protein-based analysis)

+ Codon and amino acid usages (DNA- and protein-based analysis)

+ Alignments of whole reference and target genomic elements (DNA-based analysis)

Gene list

Applied filters:

COG category: Unclassified
Genomic element: pl40

Number of genes found: 10

Free access


Show UniProt / TrEMBL protein name		View in Fasta format (DNA)		View in Fasta format (Protein)

Borrelia duttonii Ly, Ly

Name	Locus tag	Product / Description	Genomic element	Type	Begin	Length	Strand	GC-content
NA	BDU_5029	family 113-like protein, lipoprotein	pl40	CDS	26783	582	-	0.276632
NA	BDU_5017	hypothetical protein	pl40	CDS	15326	1758	+	0.311718
pf49	BDU_5026	PF49 plasmid partition protein	pl40	CDS	24306	618	+	0.265372
ppap1	BDU_5024	plasmid partitioning associated protein-1	pl40	CDS	22951	561	+	0.242424
ppap2	BDU_5023	plasmid partitioning associated protein 2	pl40	CDS	21697	1245	+	0.259438
vlp-a_3	BDU_5013	vlp protein, alpha subfamily	pl40	CDS	10823	1089	-	0.398531
vlp-a_4	BDU_5042	vlp protein, alpha subfamily	pl40	CDS	38133	1050	+	0.38
vlp-c_1	BDU_5010	vlp protein, gamma subfamily	pl40	CDS	8099	1113	-	0.390836
vlp-d	BDU_5033	vlp protein, delta subfamily	pl40	CDS	30037	1137	+	0.365875
vsp_2	BDU_5038	vsp protein	pl40	CDS	36212	681	+	0.375918