SGB - The Spirochetes Genome Browser - Gene list

Title

+ Borrelia afzelii, PKo

+ Borrelia burgdorferi ZS7, ZS7

+ Borrelia burgdorferi, B31

+ Borrelia duttonii Ly, Ly

+ Borrelia garinii High passage (300), PBi

+ Borrelia garinii, PBi

+ Borrelia hermsii DAH, DAH

+ Borrelia recurrentis A1, A1

+ Borrelia turicatae 91E135, 91E135

+ Leptospira biflexa serovar Patoc strain Patoc 1 (Ames), Patoc 1 (Ames)

+ Leptospira biflexa serovar Patoc strain Patoc 1 (Paris), Patoc 1 (Paris)

+ Leptospira borgpetersenii serovar Hardjo-bovis JB197, JB197

+ Leptospira borgpetersenii serovar Hardjo-bovis L550, L550

+ Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130

+ Leptospira interrogans serovar lai str. 56601

+ Treponema denticola ATCC 35405

+ Treponema pallidum

+ Treponema pallidum subsp. pallidum SS14, SS14

+ COG functional categories

+ (Clickable) linear whole genome views

+ Horizontal gene transfer (predicted by SIGI-HMM)

+ Sequence retrieval

+ Advanced search

+ Sequence similarity search

+ Best bidirectional hits (protein-based analysis)

+ Gene core sets (protein-based analysis)

+ Gene partnerships (DNA-based analysis)

+ Protein variations (protein-based analysis)

+ Synteny analysis (protein-based analysis)

+ Gene conservation (protein-based analysis)

+ Codon and amino acid usages (DNA- and protein-based analysis)

+ Alignments of whole reference and target genomic elements (DNA-based analysis)

Gene list

Applied filters:

COG category: Unclassified
Genomic element: pl42

Number of genes found: 16

Free access


Show UniProt / TrEMBL protein name		View in Fasta format (DNA)		View in Fasta format (Protein)

Borrelia duttonii Ly, Ly

Name	Locus tag	Product / Description	Genomic element	Type	Begin	Length	Strand	GC-content
NA	BDU_3010	ORFk-like protein	pl42	CDS	10134	699	+	0.257511
NA	BDU_3009	family 115-like protein	pl42	CDS	9442	540	-	0.287037
NA	BDU_3023	ORFk-like protein, lipoprotein	pl42	CDS	22433	708	-	0.257062
bppB_1	BDU_3012	BppB	pl42	CDS	11964	417	-	0.2494
bppB_2	BDU_3021	BppB	pl42	CDS	20326	417	+	0.251799
bsr	BDU_3008	bsr protein	pl42	CDS	8071	993	-	0.281974
pf49	BDU_3016	PF49 plasmid partition protein	pl42	CDS	15749	561	-	0.229947
ppap1	BDU_3018	plasmid partitioning associated protein-1	pl42	CDS	17059	561	-	0.254902
ppap2	BDU_3019	ORFe-like protein, plasmid partitioning associated protein-2	pl42	CDS	17629	1071	-	0.266106
vlp	BDU_3030	vlp protein	pl42	CDS	28479	1038	+	0.361272
vlp-a	BDU_3028	vlp protein, alpha subfamily	pl42	CDS	25987	1095	+	0.380822
vlp-b	BDU_3006	vlp protein, beta subfamily	pl42	CDS	5597	1086	-	0.372928
vlp-c_2	BDU_3032	vlp protein, gamma subfamily	pl42	CDS	31846	1122	+	0.390374
vlp-d_1	BDU_3001	vlp protein, delta subfamily	pl42	CDS	832	1053	-	0.368471
vlp-d_2	BDU_3038	vlp protein, delta subfamily	pl42	CDS	38002	1053	+	0.368471
vsp	BDU_3033	vsp protein	pl42	CDS	33587	729	+	0.374486