SGB - The Spirochetes Genome Browser - Gene list

Title

+ Borrelia afzelii, PKo

+ Borrelia burgdorferi ZS7, ZS7

+ Borrelia burgdorferi, B31

+ Borrelia duttonii Ly, Ly

+ Borrelia garinii High passage (300), PBi

+ Borrelia garinii, PBi

+ Borrelia hermsii DAH, DAH

+ Borrelia recurrentis A1, A1

+ Borrelia turicatae 91E135, 91E135

+ Leptospira biflexa serovar Patoc strain Patoc 1 (Ames), Patoc 1 (Ames)

+ Leptospira biflexa serovar Patoc strain Patoc 1 (Paris), Patoc 1 (Paris)

+ Leptospira borgpetersenii serovar Hardjo-bovis JB197, JB197

+ Leptospira borgpetersenii serovar Hardjo-bovis L550, L550

+ Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130

+ Leptospira interrogans serovar lai str. 56601

+ Treponema denticola ATCC 35405

+ Treponema pallidum

+ Treponema pallidum subsp. pallidum SS14, SS14

+ COG functional categories

+ (Clickable) linear whole genome views

+ Horizontal gene transfer (predicted by SIGI-HMM)

+ Sequence retrieval

+ Advanced search

+ Sequence similarity search

+ Best bidirectional hits (protein-based analysis)

+ Gene core sets (protein-based analysis)

+ Gene partnerships (DNA-based analysis)

+ Protein variations (protein-based analysis)

+ Synteny analysis (protein-based analysis)

+ Gene conservation (protein-based analysis)

+ Codon and amino acid usages (DNA- and protein-based analysis)

+ Alignments of whole reference and target genomic elements (DNA-based analysis)

Gene list

Applied filters:

COG category: Amino acid transport and metabolism
Genomic element: chromosome II

Number of genes found: 19

Free access


Show UniProt / TrEMBL protein name		View in Fasta format (DNA)		View in Fasta format (Protein)

Leptospira interrogans serovar lai str. 56601

Name	Locus tag	Product / Description	Genomic element	Type	Begin	Length	Strand	GC-content
LB073		lysine arginine ornithine transport system kinase	chromosome II	CDS	61981	969	-	0.409701
LB080		conserved hypothetical protein	chromosome II	CDS	70349	1932	+	0.312112
LB187		conserved hypothetical protein	chromosome II	CDS	182182	1209	+	0.3689
LB207		hypothetical protein	chromosome II	CDS	199351	1389	+	0.330454
LB245		probable sodium:solute symporter	chromosome II	CDS	242934	1389	-	0.384449
LB267		aminotransferase	chromosome II	CDS	266337	1152	-	0.381076
LB298		L-lysine 2,3-aminomutase	chromosome II	CDS	298418	1098	+	0.3898
LB312		hypothetical protein	chromosome II	CDS	308686	867	-	0.400231
LB358		hypothetical protein	chromosome II	CDS	347158	1566	+	0.331418
argB		acetylglutamate kinase	chromosome II	CDS	106440	885	-	0.388701
argK		argK	chromosome II	CDS	274304	1056	+	0.399621
aroB		3-dehydroquinate synthase	chromosome II	CDS	75995	1086	+	0.370166
aroK		shikimic acid kinase I	chromosome II	CDS	118184	540	-	0.355556
asd		aspartate-semialdehyde dehydrogenase	chromosome II	CDS	343915	1050	-	0.399048
gltB2		glutamate synthase	chromosome II	CDS	285144	1653	+	0.414398
hisE		phosphoribosyl-ATP pyrophosphohydrolase	chromosome II	CDS	70067	279	+	0.383513
metF		5,10-methylenetetrahydrofolate reductase	chromosome II	CDS	2491	933	+	0.383708
metH		B12-dependent homocysteine-N5-methyltetrahydrofolate transmethylase	chromosome II	CDS	97341	3744	+	0.405983
speE2		spermidine synthase	chromosome II	CDS	307834	846	-	0.406619