SGB - The Spirochetes Genome Browser - Gene list

Title

+ Borrelia afzelii, PKo

+ Borrelia burgdorferi ZS7, ZS7

+ Borrelia burgdorferi, B31

+ Borrelia duttonii Ly, Ly

+ Borrelia garinii High passage (300), PBi

+ Borrelia garinii, PBi

+ Borrelia hermsii DAH, DAH

+ Borrelia recurrentis A1, A1

+ Borrelia turicatae 91E135, 91E135

+ Leptospira biflexa serovar Patoc strain Patoc 1 (Ames), Patoc 1 (Ames)

+ Leptospira biflexa serovar Patoc strain Patoc 1 (Paris), Patoc 1 (Paris)

+ Leptospira borgpetersenii serovar Hardjo-bovis JB197, JB197

+ Leptospira borgpetersenii serovar Hardjo-bovis L550, L550

+ Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130

+ Leptospira interrogans serovar lai str. 56601

+ Treponema denticola ATCC 35405

+ Treponema pallidum

+ Treponema pallidum subsp. pallidum SS14, SS14

+ COG functional categories

+ (Clickable) linear whole genome views

+ Horizontal gene transfer (predicted by SIGI-HMM)

+ Sequence retrieval

+ Advanced search

+ Sequence similarity search

+ Best bidirectional hits (protein-based analysis)

+ Gene core sets (protein-based analysis)

+ Gene partnerships (DNA-based analysis)

+ Protein variations (protein-based analysis)

+ Synteny analysis (protein-based analysis)

+ Gene conservation (protein-based analysis)

+ Codon and amino acid usages (DNA- and protein-based analysis)

+ Alignments of whole reference and target genomic elements (DNA-based analysis)

Gene list

Applied filters:

COG category: Carbohydrate transport and metabolism
Genomic element: chromosome II

Number of genes found: 17

Free access


Show UniProt / TrEMBL protein name		View in Fasta format (DNA)		View in Fasta format (Protein)

Leptospira interrogans serovar lai str. 56601

Name	Locus tag	Product / Description	Genomic element	Type	Begin	Length	Strand	GC-content
LB063		conserved hypothetical protein	chromosome II	CDS	52906	1020	-	0.357843
LB080		conserved hypothetical protein	chromosome II	CDS	70349	1932	+	0.312112
LB098		Predicted xylanase/chitin deacetilase	chromosome II	CDS	88780	1431	-	0.350804
LB102		phospholysine phosphohistidine inorganic pyrophosphate phosphatase	chromosome II	CDS	91672	810	+	0.345679
LB111		pyrophosphate--fructose 6-phosphate 1-phosphotransferase	chromosome II	CDS	103023	1296	+	0.393519
LB170		similar to capsular polysaccharide biosynthesis protein	chromosome II	CDS	165785	1890	+	0.384656
LB187		conserved hypothetical protein	chromosome II	CDS	182182	1209	+	0.3689
LB190		hypothetical protein	chromosome II	CDS	183575	531	-	0.380414
LB207		hypothetical protein	chromosome II	CDS	199351	1389	+	0.330454
LB251		conserved hypothetical protein	chromosome II	CDS	247350	1965	-	0.379644
LB254		putative sugar transport protein	chromosome II	CDS	250911	1215	-	0.37037
LB292		probable sugar aldolase	chromosome II	CDS	292348	750	-	0.398667
LB358		hypothetical protein	chromosome II	CDS	347158	1566	+	0.331418
batD		BatD	chromosome II	CDS	46207	1644	+	0.365572
galF		UDP-glucose pyrophosphorylase	chromosome II	CDS	259245	1419	-	0.384073
pmgA		phosphoglycerate mutase	chromosome II	CDS	143870	624	-	0.302885
pyk2		pyruvate kinase	chromosome II	CDS	340442	1461	-	0.415469