SGB - The Spirochetes Genome Browser - Gene list

Title

+ Borrelia afzelii, PKo

+ Borrelia burgdorferi ZS7, ZS7

+ Borrelia burgdorferi, B31

+ Borrelia duttonii Ly, Ly

+ Borrelia garinii High passage (300), PBi

+ Borrelia garinii, PBi

+ Borrelia hermsii DAH, DAH

+ Borrelia recurrentis A1, A1

+ Borrelia turicatae 91E135, 91E135

+ Leptospira biflexa serovar Patoc strain Patoc 1 (Ames), Patoc 1 (Ames)

+ Leptospira biflexa serovar Patoc strain Patoc 1 (Paris), Patoc 1 (Paris)

+ Leptospira borgpetersenii serovar Hardjo-bovis JB197, JB197

+ Leptospira borgpetersenii serovar Hardjo-bovis L550, L550

+ Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130

+ Leptospira interrogans serovar lai str. 56601

+ Treponema denticola ATCC 35405

+ Treponema pallidum

+ Treponema pallidum subsp. pallidum SS14, SS14

+ COG functional categories

+ (Clickable) linear whole genome views

+ Horizontal gene transfer (predicted by SIGI-HMM)

+ Sequence retrieval

+ Advanced search

+ Sequence similarity search

+ Best bidirectional hits (protein-based analysis)

+ Gene core sets (protein-based analysis)

+ Gene partnerships (DNA-based analysis)

+ Protein variations (protein-based analysis)

+ Synteny analysis (protein-based analysis)

+ Gene conservation (protein-based analysis)

+ Codon and amino acid usages (DNA- and protein-based analysis)

+ Alignments of whole reference and target genomic elements (DNA-based analysis)

Gene list

Applied filters:

COG category: Transcription
Genomic element: chromosome II

Number of genes found: 16

Free access


Show UniProt / TrEMBL protein name		View in Fasta format (DNA)		View in Fasta format (Protein)

Leptospira interrogans serovar lai str. 56601

Name	Locus tag	Product / Description	Genomic element	Type	Begin	Length	Strand	GC-content
LB015		two-component response regulator	chromosome II	CDS	12056	693	+	0.405483
LB037		putative sucrose/H+ symporter	chromosome II	CDS	29824	459	+	0.368192
LB084		ribonuclease III	chromosome II	CDS	74293	744	+	0.352151
LB104		putative TetR-family transcriptional regulator	chromosome II	CDS	93181	579	-	0.300518
LB105		transcriptional regulator, ArsR family	chromosome II	CDS	94594	1017	+	0.425762
LB130		transcriptional regulator, AraC family	chromosome II	CDS	123146	1146	-	0.338569
LB131		putative transcriptional regulator, araC family protein	chromosome II	CDS	124576	1110	-	0.335135
LB139		putative regulation protein contains HAMP domain	chromosome II	CDS	133632	1494	-	0.364792
LB144		RNA polymerase ECF-type sigma factor	chromosome II	CDS	139426	522	-	0.396552
LB164		unknown protein confirmed by proteomics	chromosome II	CDS	159124	372	-	0.330645
LB228		Putative AraC-type Regulator	chromosome II	CDS	224104	1233	+	0.290349
LB325		transcriptional regulator, TetR family	chromosome II	CDS	320145	729	+	0.351166
LB333		two-component response regulator	chromosome II	CDS	327874	732	+	0.372951
LB367		hypothetical protein	chromosome II	CDS	357993	939	+	0.381257
parB3		ParB protein	chromosome II	CDS	23222	708	+	0.362994
parB4		ParB family protein	chromosome II	CDS	356714	846	+	0.351064