Gene list
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COG category: Replication, recombination and repair
Genomic element: chromosome I
Number of genes found: 95
Show UniProt / TrEMBL protein name | View in Fasta format (DNA) | View in Fasta format (Protein) | ||||
Leptospira biflexa serovar Patoc strain Patoc 1 (Paris), Patoc 1 (Paris) | ||||||||
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Name | Locus tag | Product / Description | Genomic element | Type | Begin | Length | Strand | GC-content |
NA | LEPBI_I2313 | Conserved hypothetical protein | chromosome I | CDS | 2382637 | 675 | - | 0.367407 |
NA | LEPBI_I2540 | DNA-binding stress protein, Dps family | chromosome I | CDS | 2628472 | 471 | + | 0.420382 |
NA | LEPBI_I0533 | Putative methyltransferase | chromosome I | CDS | 528999 | 615 | + | 0.38374 |
NA | LEPBI_I2275 | Hypothetical protein | chromosome I | CDS | 2343206 | 258 | + | 0.317829 |
NA | LEPBI_I2847 | Putative ribonuclease H | chromosome I | CDS | 2938489 | 414 | + | 0.374396 |
NA | LEPBI_I2544 | Putative DNA repair helicase | chromosome I | CDS | 2632227 | 1698 | - | 0.425206 |
NA | LEPBI_I1287 | Putative A/G-specific DNA glycosylase | chromosome I | CDS | 1342450 | 1062 | + | 0.38983 |
NA | LEPBI_I1669 | Conserved hypothetical protein | chromosome I | CDS | 1741523 | 345 | + | 0.373913 |
NA | LEPBI_I0047 | Transposase, IS30 family | chromosome I | CDS | 45843 | 993 | - | 0.349446 |
NA | LEPBI_I0334 | Putative DNA mismatch repair protein; putative membrane protein | chromosome I | CDS | 334985 | 1542 | - | 0.353437 |
NA | LEPBI_I1665 | Putative ribonuclease H | chromosome I | CDS | 1738756 | 465 | + | 0.43871 |
NA | LEPBI_I2068 | Conserved hypothetical protein | chromosome I | CDS | 2158091 | 543 | + | 0.412523 |
NA | LEPBI_I3056 | Hypothetical protein; putative signal peptide | chromosome I | CDS | 3168393 | 816 | + | 0.447304 |
NA | LEPBI_I1630 | Putative DNA repair protein RecN | chromosome I | CDS | 1703654 | 1710 | + | 0.438012 |
NA | LEPBI_I1344 | Putative methyltransferase DNA modification enzyme | chromosome I | CDS | 1399528 | 1158 | + | 0.38601 |
NA | LEPBI_I3269 | Putative integrase | chromosome I | CDS | 3383010 | 660 | + | 0.418182 |
NA | LEPBI_I3091 | Transposase, IS30 family | chromosome I | CDS | 3203654 | 993 | + | 0.35146 |
NA | LEPBI_I0690 | Putative DNA processing chain A DprA, SMF family | chromosome I | CDS | 697908 | 927 | + | 0.413161 |
NA | LEPBI_I1290 | Putative DNA mismatch repair protein | chromosome I | CDS | 1346701 | 276 | + | 0.456522 |
NA | LEPBI_I1792 | Conserved hypothetical protein | chromosome I | CDS | 1870170 | 1077 | + | 0.400186 |
NA | LEPBI_I0753 | Putative helicase | chromosome I | CDS | 768582 | 3141 | - | 0.351799 |
NA | LEPBI_I2175 | Putative ATPase | chromosome I | CDS | 2261672 | 1464 | + | 0.335383 |
NA | LEPBI_I0171 | Putative hydrolase | chromosome I | CDS | 166221 | 627 | - | 0.432217 |
NA | LEPBI_I0809 | Conserved hypothetical protein | chromosome I | CDS | 823171 | 297 | + | 0.417508 |
NA | LEPBI_I1295 | Putative ATPase involved in DNA replication | chromosome I | CDS | 1349946 | 1260 | + | 0.461111 |
NA | LEPBI_I2161 | Putative DNA polymerase | chromosome I | CDS | 2249020 | 2664 | + | 0.353979 |
NA | LEPBI_I1719 | Putative ATP-dependent helicase | chromosome I | CDS | 1790301 | 1986 | + | 0.382679 |
NA | LEPBI_I1217 | Putative transposase B, catalytic region | chromosome I | CDS | 1268793 | 621 | + | 0.344605 |
NA | LEPBI_I3318 | Putative crossover junction endodeoxyribonuclease RuvC (Holliday junction nuclease ruvC) | chromosome I | CDS | 3431590 | 477 | + | 0.484277 |
NA | LEPBI_I1205 | Putative integrase/recombinase | chromosome I | CDS | 1257441 | 897 | - | 0.329989 |
NA | LEPBI_I2170 | Putative nucleoside triphosphate hydrolase | chromosome I | CDS | 2256000 | 1377 | + | 0.318083 |
NA | LEPBI_I3468 | Putative hydrolase | chromosome I | CDS | 3587477 | 819 | - | 0.373626 |
NA | LEPBI_I1212 | Hypothetical protein | chromosome I | CDS | 1264442 | 141 | - | 0.397163 |
NA | LEPBI_I2136 | ATP-dependent RNA helicase | chromosome I | CDS | 2228150 | 1590 | - | 0.433962 |
NA | LEPBI_I3287 | Conserved hypothetical protein | chromosome I | CDS | 3398694 | 423 | - | 0.330969 |
NA | LEPBI_I3182 | Putative DNA repair system specific for alkylated DNA | chromosome I | CDS | 3294482 | 609 | - | 0.385879 |
NA | LEPBI_I2396 | Conserved hypothetical protein | chromosome I | CDS | 2467584 | 513 | - | 0.438596 |
NA | LEPBI_I1379 | Putative helicase | chromosome I | CDS | 1436065 | 1782 | - | 0.398429 |
NA | LEPBI_I2365 | Conserved hypothetical protein; putative signal peptide | chromosome I | CDS | 2436170 | 1680 | - | 0.390476 |
NA | LEPBI_I2709 | Conserved hypothetical protein | chromosome I | CDS | 2804703 | 3231 | + | 0.421541 |
NA | LEPBI_I1116 | Putative HNH endonuclease | chromosome I | CDS | 1163328 | 294 | - | 0.377551 |
NA | LEPBI_I0633 | Putative DNA repair photolyase | chromosome I | CDS | 638462 | 999 | - | 0.357357 |
NA | LEPBI_I2906 | Conserved hypothetical protein | chromosome I | CDS | 3001360 | 1092 | - | 0.391941 |
NA | LEPBI_I0568 | Putative methylated DNA-protein cysteine methyltransferase, C-terminal domain | chromosome I | CDS | 568412 | 294 | - | 0.37415 |
NA | LEPBI_I0471 | Putative integrase/recombinase | chromosome I | CDS | 465708 | 1287 | - | 0.362859 |
dnaA | LEPBI_I0001 | Chromosomal replication initiator protein DnaA | chromosome I | CDS | 141 | 1326 | + | 0.394419 |
dnaB | LEPBI_I2096 | Replicative DNA helicase | chromosome I | CDS | 2191697 | 1344 | - | 0.438988 |
dnaC | LEPBI_I0269 | DNA replication protein DnaC | chromosome I | CDS | 263176 | 870 | + | 0.426437 |
dnaE | LEPBI_I2936 | DNA polymerase III alpha subunit | chromosome I | CDS | 3033408 | 3522 | - | 0.390119 |
dnaG | LEPBI_I1566 | DNA primase | chromosome I | CDS | 1632050 | 1812 | + | 0.415011 |
dnaN | LEPBI_I0002 | DNA polymerase III, beta chain | chromosome I | CDS | 1713 | 1119 | + | 0.364611 |
dnaX1 | LEPBI_I3461 | DNA polymerase III gamma subunit | chromosome I | CDS | 3579644 | 1494 | + | 0.366801 |
dnaX2 | LEPBI_I3479 | DNA polymerase III subunit gamma/tau | chromosome I | CDS | 3598605 | 933 | + | 0.386924 |
endA | LEPBI_I1902 | Endonuclease I; putative signal peptide | chromosome I | CDS | 1994246 | 774 | + | 0.423773 |
exoA | LEPBI_I1829 | Exodeoxyribonuclease | chromosome I | CDS | 1918120 | 771 | + | 0.411154 |
gyrA1 | LEPBI_I0006 | DNA gyrase subunit A | chromosome I | CDS | 6272 | 2532 | + | 0.401659 |
gyrA2 | LEPBI_I0679 | DNA gyrase/topoisomerase, type IV, subunit A | chromosome I | CDS | 684784 | 1386 | + | 0.391053 |
gyrB1 | LEPBI_I0005 | DNA gyrase subunit B | chromosome I | CDS | 4333 | 1920 | + | 0.405729 |
gyrB2 | LEPBI_I0680 | DNA gyrase/topoisomerase, type IIa, subunit B | chromosome I | CDS | 686176 | 2127 | + | 0.406676 |
hepA | LEPBI_I3440 | ATP-dependent RNA helicase | chromosome I | CDS | 3559378 | 2847 | + | 0.361433 |
ligA | LEPBI_I0217 | DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) | chromosome I | CDS | 207283 | 2016 | - | 0.402778 |
mfd | LEPBI_I1823 | Transcription-repair coupling factor (TRCF; ATP-dependent helicase Mfd) | chromosome I | CDS | 1906326 | 3423 | - | 0.378907 |
mutL | LEPBI_I2151 | DNA mismatch repair protein MutL | chromosome I | CDS | 2239591 | 1845 | - | 0.463415 |
mutS | LEPBI_I0833 | DNA mismatch repair protein MutS | chromosome I | CDS | 845632 | 2502 | - | 0.382894 |
nth | LEPBI_I1021 | Endonuclease III (DNA-(apurinic or apyrimidinic site) lyase) | chromosome I | CDS | 1064891 | 642 | + | 0.461059 |
nudH | LEPBI_I3326 | (Di)nucleoside polyphosphate hydrolase, Nudix hydrolase family (Invasion protein A) | chromosome I | CDS | 3437132 | 519 | + | 0.373796 |
pcrA1 | LEPBI_I1634 | ATP-dependent DNA helicase PcrA | chromosome I | CDS | 1709375 | 2184 | + | 0.36859 |
pcrA2 | LEPBI_I2378 | ATP-dependent DNA helicase PcrA | chromosome I | CDS | 2450345 | 1284 | + | 0.367601 |
pcrA3 | LEPBI_I1736 | ATP-dependent DNA helicase PcrA | chromosome I | CDS | 1810808 | 1995 | + | 0.368421 |
pcrA4 | LEPBI_I2066 | ATP-dependent DNA helicase PcrA | chromosome I | CDS | 2155278 | 2037 | - | 0.442808 |
phr | LEPBI_I2409 | Deoxyribodipyrimidine photolyase (DNA photolyase; Photoreactivating enzyme) | chromosome I | CDS | 2481168 | 1491 | + | 0.373575 |
polA | LEPBI_I0674 | DNA polymerase I (POL I) | chromosome I | CDS | 677667 | 2829 | - | 0.376458 |
priA | LEPBI_I1656 | Primosomal protein N' (Replication factor Y) | chromosome I | CDS | 1731724 | 1953 | + | 0.409626 |
recA | LEPBI_I2446 | Protein RecA (Recombinase A) | chromosome I | CDS | 2520970 | 1164 | + | 0.454467 |
recF | LEPBI_I0003 | DNA replication and repair protein RecF | chromosome I | CDS | 2831 | 1104 | + | 0.356884 |
recG | LEPBI_I0349 | ATP-dependent DNA helicase RecG | chromosome I | CDS | 347933 | 2061 | + | 0.388646 |
recJ | LEPBI_I1309 | Single-stranded-DNA-specific exonuclease RecJ | chromosome I | CDS | 1363581 | 1989 | - | 0.409251 |
recO | LEPBI_I2091 | DNA repair protein RecO (Recombination protein O) | chromosome I | CDS | 2185296 | 750 | - | 0.392 |
recQ1 | LEPBI_I0309 | ATP-dependent DNA helicase RecQ | chromosome I | CDS | 306964 | 1857 | - | 0.430802 |
recQ2 | LEPBI_I2503 | ATP-dependent DNA helicase RecQ | chromosome I | CDS | 2587224 | 1446 | - | 0.377593 |
recR | LEPBI_I3463 | Recombination protein RecR | chromosome I | CDS | 3581501 | 609 | + | 0.377668 |
rhlE | LEPBI_I2827 | ATP-dependent RNA helicase RhlE | chromosome I | CDS | 2919379 | 1416 | - | 0.410311 |
ruvA | LEPBI_I1501 | Holliday junction DNA helicase RuvA | chromosome I | CDS | 1561155 | 600 | - | 0.391667 |
ruvB | LEPBI_I0524 | Holliday junction DNA helicase RuvB | chromosome I | CDS | 522943 | 1026 | + | 0.489279 |
ssbA | LEPBI_I2099 | Single-stranded DNA binding protein (SSB; Helix-destabilizing protein) | chromosome I | CDS | 2193874 | 444 | - | 0.439189 |
ssbB | LEPBI_I2975 | Single-strand binding protein (SSB; Helix-destabilizing protein) | chromosome I | CDS | 3078420 | 354 | - | 0.39548 |
topA | LEPBI_I1163 | DNA topoisomerase I | chromosome I | CDS | 1210111 | 1878 | + | 0.355698 |
ung | LEPBI_I0821 | Uracil-DNA glycosylase (UDG) | chromosome I | CDS | 834571 | 657 | - | 0.374429 |
uvrA | LEPBI_I1837 | UvrABC system protein A (UvrA protein; Excinuclease ABC subunit A) | chromosome I | CDS | 1925901 | 2865 | - | 0.431414 |
uvrB | LEPBI_I0845 | UvrABC system protein B (UvrB protein; Excinuclease ABC subunit B) | chromosome I | CDS | 857245 | 1995 | + | 0.390476 |
uvrC | LEPBI_I2076 | UvrABC system protein C (UvrC protein; Excinuclease ABC subunit C) | chromosome I | CDS | 2168050 | 1845 | - | 0.404336 |
xerC | LEPBI_I2445 | Tyrosine recombinase XerC | chromosome I | CDS | 2519737 | 936 | - | 0.382479 |
xerD | LEPBI_I2357 | Tyrosine recombinase xerD | chromosome I | CDS | 2426704 | 909 | - | 0.382838 |
xseA | LEPBI_I1860 | Exodeoxyribonuclease VII large subunit (Exonuclease VII large subunit) | chromosome I | CDS | 1950641 | 1296 | + | 0.415895 |
xseB | LEPBI_I1861 | Exodeoxyribonuclease VII small subunit (Exonuclease VII small subunit) | chromosome I | CDS | 1951926 | 276 | + | 0.358696 |