SGB - The Spirochetes Genome Browser - Gene list

Title

+ Borrelia afzelii, PKo

+ Borrelia burgdorferi ZS7, ZS7

+ Borrelia burgdorferi, B31

+ Borrelia duttonii Ly, Ly

+ Borrelia garinii High passage (300), PBi

+ Borrelia garinii, PBi

+ Borrelia hermsii DAH, DAH

+ Borrelia recurrentis A1, A1

+ Borrelia turicatae 91E135, 91E135

+ Leptospira biflexa serovar Patoc strain Patoc 1 (Ames), Patoc 1 (Ames)

+ Leptospira biflexa serovar Patoc strain Patoc 1 (Paris), Patoc 1 (Paris)

+ Leptospira borgpetersenii serovar Hardjo-bovis JB197, JB197

+ Leptospira borgpetersenii serovar Hardjo-bovis L550, L550

+ Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130

+ Leptospira interrogans serovar lai str. 56601

+ Treponema denticola ATCC 35405

+ Treponema pallidum

+ Treponema pallidum subsp. pallidum SS14, SS14

+ COG functional categories

+ (Clickable) linear whole genome views

+ Horizontal gene transfer (predicted by SIGI-HMM)

+ Sequence retrieval

+ Advanced search

+ Sequence similarity search

+ Best bidirectional hits (protein-based analysis)

+ Gene core sets (protein-based analysis)

+ Gene partnerships (DNA-based analysis)

+ Protein variations (protein-based analysis)

+ Synteny analysis (protein-based analysis)

+ Gene conservation (protein-based analysis)

+ Codon and amino acid usages (DNA- and protein-based analysis)

+ Alignments of whole reference and target genomic elements (DNA-based analysis)

Gene list

Applied filters:

COG category: NOT ANALYZED
Genomic element: pl40

Number of genes found: 24

Free access


Show UniProt / TrEMBL protein name		View in Fasta format (DNA)		View in Fasta format (Protein)

Borrelia duttonii Ly, Ly

Name	Locus tag	Product / Description	Genomic element	Type	Begin	Length	Strand	GC-content
NA	BDU_5027		pl40	pseudo	25378	291	+	0.278351
NA	BDU_5006		pl40	pseudo	4047	913	-	0.36035
NA	BDU_5039		pl40	pseudo	37356	144	+	0.361111
NA	BDU_5036		pl40	pseudo	33877	942	+	0.375796
NA	BDU_5016		pl40	pseudo	14176	538	-	0.276952
NA	BDU_5012		pl40	pseudo	9737	507	-	0.372781
NA	BDU_5020		pl40	pseudo	19439	174	-	0.275862
NA	BDU_5037		pl40	pseudo	35146	489	+	0.382413
NA	BDU_5041		pl40	pseudo	37768	120	+	0.383333
NA	BDU_5022		pl40	pseudo	20286	1353	-	0.266075
NA	BDU_5004		pl40	pseudo	2405	306	-	0.369281
NA	BDU_5002		pl40	pseudo	1740	237	-	0.341772
NA	BDU_5011		pl40	pseudo	9462	297	-	0.367003
NA	BDU_5003		pl40	pseudo	1816	594	+	0.382155
NA	BDU_5019		pl40	pseudo	18681	555	+	0.275676
NA	BDU_5030		pl40	pseudo	27611	545	+	0.288073
NA	BDU_5001		pl40	pseudo	250	852	-	0.284038
NA	BDU_5028		pl40	pseudo	25705	264	+	0.310606
NA	BDU_5040		pl40	pseudo	37538	234	+	0.324786
NA	BDU_5007		pl40	pseudo	5293	378	-	0.333333
NA	BDU_5015		pl40	pseudo	12824	1354	-	0.277696
NA	BDU_5009		pl40	pseudo	7063	788	-	0.390863
NA	BDU_5018		pl40	pseudo	17459	627	+	0.258373
NA	BDU_5031		pl40	pseudo	28161	925	+	0.273514