SGB - The Spirochetes Genome Browser - Gene list

Title

+ Borrelia afzelii, PKo

+ Borrelia burgdorferi ZS7, ZS7

+ Borrelia burgdorferi, B31

+ Borrelia duttonii Ly, Ly

+ Borrelia garinii High passage (300), PBi

+ Borrelia garinii, PBi

+ Borrelia hermsii DAH, DAH

+ Borrelia recurrentis A1, A1

+ Borrelia turicatae 91E135, 91E135

+ Leptospira biflexa serovar Patoc strain Patoc 1 (Ames), Patoc 1 (Ames)

+ Leptospira biflexa serovar Patoc strain Patoc 1 (Paris), Patoc 1 (Paris)

+ Leptospira borgpetersenii serovar Hardjo-bovis JB197, JB197

+ Leptospira borgpetersenii serovar Hardjo-bovis L550, L550

+ Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130

+ Leptospira interrogans serovar lai str. 56601

+ Treponema denticola ATCC 35405

+ Treponema pallidum

+ Treponema pallidum subsp. pallidum SS14, SS14

+ COG functional categories

+ (Clickable) linear whole genome views

+ Horizontal gene transfer (predicted by SIGI-HMM)

+ Sequence retrieval

+ Advanced search

+ Sequence similarity search

+ Best bidirectional hits (protein-based analysis)

+ Gene core sets (protein-based analysis)

+ Gene partnerships (DNA-based analysis)

+ Protein variations (protein-based analysis)

+ Synteny analysis (protein-based analysis)

+ Gene conservation (protein-based analysis)

+ Codon and amino acid usages (DNA- and protein-based analysis)

+ Alignments of whole reference and target genomic elements (DNA-based analysis)

Gene list

Applied filters:

COG category: NOT ANALYZED
Genomic element: pl42

Number of genes found: 19

Free access


Show UniProt / TrEMBL protein name		View in Fasta format (DNA)		View in Fasta format (Protein)

Borrelia duttonii Ly, Ly

Name	Locus tag	Product / Description	Genomic element	Type	Begin	Length	Strand	GC-content
NA	BDU_3005		pl42	pseudo	4657	584	-	0.39726
NA	BDU_3007		pl42	pseudo	7509	557	-	0.262118
NA	BDU_3022		pl42	pseudo	20959	635	-	0.248819
NA	BDU_3011		pl42	pseudo	11073	313	+	0.214058
NA	BDU_3031		pl42	pseudo	30099	987	+	0.365755
NA	BDU_3003		pl42	pseudo	2914	274	-	0.386861
NA	BDU_3039		pl42	pseudo	41255	225	+	0.337778
NA	BDU_3002		pl42	pseudo	2089	827	-	0.376058
NA	BDU_3020		pl42	pseudo	18928	1263	+	0.266033
NA	BDU_3013		pl42	pseudo	12419	471	-	0.295117
NA	BDU_3015		pl42	pseudo	14689	767	-	0.259452
NA	BDU_3037		pl42	pseudo	36989	827	+	0.376058
NA	BDU_3026		pl42	pseudo	25321	207	+	0.2657
NA	BDU_3014		pl42	pseudo	13318	452	-	0.276549
NA	BDU_3024		pl42	pseudo	23519	1052	+	0.265209
NA	BDU_3027		pl42	pseudo	25610	192	+	0.302083
NA	BDU_3034		pl42	pseudo	34602	684	+	0.391813
NA	BDU_3029		pl42	pseudo	27171	1130	+	0.378761
NA	BDU_3036		pl42	pseudo	36717	274	+	0.386861