SGB - The Spirochetes Genome Browser - Gene list

Title

+ Borrelia afzelii, PKo

+ Borrelia burgdorferi ZS7, ZS7

+ Borrelia burgdorferi, B31

+ Borrelia duttonii Ly, Ly

+ Borrelia garinii High passage (300), PBi

+ Borrelia garinii, PBi

+ Borrelia hermsii DAH, DAH

+ Borrelia recurrentis A1, A1

+ Borrelia turicatae 91E135, 91E135

+ Leptospira biflexa serovar Patoc strain Patoc 1 (Ames), Patoc 1 (Ames)

+ Leptospira biflexa serovar Patoc strain Patoc 1 (Paris), Patoc 1 (Paris)

+ Leptospira borgpetersenii serovar Hardjo-bovis JB197, JB197

+ Leptospira borgpetersenii serovar Hardjo-bovis L550, L550

+ Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130

+ Leptospira interrogans serovar lai str. 56601

+ Treponema denticola ATCC 35405

+ Treponema pallidum

+ Treponema pallidum subsp. pallidum SS14, SS14

+ COG functional categories

+ (Clickable) linear whole genome views

+ Horizontal gene transfer (predicted by SIGI-HMM)

+ Sequence retrieval

+ Advanced search

+ Sequence similarity search

+ Best bidirectional hits (protein-based analysis)

+ Gene core sets (protein-based analysis)

+ Gene partnerships (DNA-based analysis)

+ Protein variations (protein-based analysis)

+ Synteny analysis (protein-based analysis)

+ Gene conservation (protein-based analysis)

+ Codon and amino acid usages (DNA- and protein-based analysis)

+ Alignments of whole reference and target genomic elements (DNA-based analysis)

Gene list

Applied filters:

COG category: Inorganic ion transport and metabolism
Genomic element: chromosome II

Number of genes found: 12

Free access


Show UniProt / TrEMBL protein name		View in Fasta format (DNA)		View in Fasta format (Protein)

Leptospira interrogans serovar lai str. 56601

Name	Locus tag	Product / Description	Genomic element	Type	Begin	Length	Strand	GC-content
LB080		conserved hypothetical protein	chromosome II	CDS	70349	1932	+	0.312112
LB183		transcriptional regulator (Fur family)	chromosome II	CDS	179453	393	-	0.40458
LB186		heme oxygenase	chromosome II	CDS	181530	678	+	0.367257
LB187		conserved hypothetical protein	chromosome II	CDS	182182	1209	+	0.3689
LB191		putative TonB-dependent outer membrane receptor protein	chromosome II	CDS	184996	2133	-	0.369433
LB199		putative outermembrane protein	chromosome II	CDS	191222	1356	-	0.365044
LB207		hypothetical protein	chromosome II	CDS	199351	1389	+	0.330454
LB271		conserved hypothetical protein	chromosome II	CDS	269322	186	+	0.38172
LB272		conserved hypothetical protein	chromosome II	CDS	269486	639	+	0.353678
LB279		hypothetical protein	chromosome II	CDS	278133	2661	+	0.393837
LB358		hypothetical protein	chromosome II	CDS	347158	1566	+	0.331418
pstS		phosphate-binding protein PstS	chromosome II	CDS	297444	900	+	0.381111