SGB - The Spirochetes Genome Browser - Gene list

Title

+ Borrelia afzelii, PKo

+ Borrelia burgdorferi ZS7, ZS7

+ Borrelia burgdorferi, B31

+ Borrelia duttonii Ly, Ly

+ Borrelia garinii High passage (300), PBi

+ Borrelia garinii, PBi

+ Borrelia hermsii DAH, DAH

+ Borrelia recurrentis A1, A1

+ Borrelia turicatae 91E135, 91E135

+ Leptospira biflexa serovar Patoc strain Patoc 1 (Ames), Patoc 1 (Ames)

+ Leptospira biflexa serovar Patoc strain Patoc 1 (Paris), Patoc 1 (Paris)

+ Leptospira borgpetersenii serovar Hardjo-bovis JB197, JB197

+ Leptospira borgpetersenii serovar Hardjo-bovis L550, L550

+ Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130

+ Leptospira interrogans serovar lai str. 56601

+ Treponema denticola ATCC 35405

+ Treponema pallidum

+ Treponema pallidum subsp. pallidum SS14, SS14

+ COG functional categories

+ (Clickable) linear whole genome views

+ Horizontal gene transfer (predicted by SIGI-HMM)

+ Sequence retrieval

+ Advanced search

+ Sequence similarity search

+ Best bidirectional hits (protein-based analysis)

+ Gene core sets (protein-based analysis)

+ Gene partnerships (DNA-based analysis)

+ Protein variations (protein-based analysis)

+ Synteny analysis (protein-based analysis)

+ Gene conservation (protein-based analysis)

+ Codon and amino acid usages (DNA- and protein-based analysis)

+ Alignments of whole reference and target genomic elements (DNA-based analysis)

Gene list

Applied filters:

COG category: Function unknown
Genomic element: chromosome II

Number of genes found: 16

Free access


Show UniProt / TrEMBL protein name		View in Fasta format (DNA)		View in Fasta format (Protein)

Leptospira interrogans serovar lai str. 56601

Name	Locus tag	Product / Description	Genomic element	Type	Begin	Length	Strand	GC-content
LB030		probable intercellular adhesion protein C	chromosome II	CDS	25233	1164	-	0.332474
LB042		hypothetical protein	chromosome II	CDS	32517	423	+	0.375887
LB047		conserved hypothetical protein	chromosome II	CDS	36004	1323	+	0.376417
LB143		similar to putative lipoprotein qlp42	chromosome II	CDS	138314	1092	-	0.358059
LB153		conserved hypothetical protein	chromosome II	CDS	148612	738	-	0.368564
LB196		putative LRR repeat family protein	chromosome II	CDS	189081	528	+	0.318182
LB198		conserved hypothetical protein	chromosome II	CDS	190812	306	-	0.352941
LB218		conserved hypothetical protein	chromosome II	CDS	211547	1392	+	0.346264
LB268		conserved hypothetical protein	chromosome II	CDS	267499	870	-	0.387356
LB269		conserved hypothetical protein	chromosome II	CDS	268431	627	-	0.358852
LB285		conserved hypothetical protein	chromosome II	CDS	284338	795	+	0.337107
LB293		probable ARD family methionine salvage pathway enzyme	chromosome II	CDS	293099	534	-	0.378277
LB305		conserved hypothetical protein	chromosome II	CDS	303419	495	-	0.325253
LB307		conserved hypothetical protein	chromosome II	CDS	304360	459	-	0.363834
cbiX		putative cbiX protein	chromosome II	CDS	159516	1170	-	0.342735
traB		pheromone shutdown protein	chromosome II	CDS	120255	1227	+	0.370008