SGB - The Spirochetes Genome Browser - Gene list

Title

+ Borrelia afzelii, PKo

+ Borrelia burgdorferi ZS7, ZS7

+ Borrelia burgdorferi, B31

+ Borrelia duttonii Ly, Ly

+ Borrelia garinii High passage (300), PBi

+ Borrelia garinii, PBi

+ Borrelia hermsii DAH, DAH

+ Borrelia recurrentis A1, A1

+ Borrelia turicatae 91E135, 91E135

+ Leptospira biflexa serovar Patoc strain Patoc 1 (Ames), Patoc 1 (Ames)

+ Leptospira biflexa serovar Patoc strain Patoc 1 (Paris), Patoc 1 (Paris)

+ Leptospira borgpetersenii serovar Hardjo-bovis JB197, JB197

+ Leptospira borgpetersenii serovar Hardjo-bovis L550, L550

+ Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130

+ Leptospira interrogans serovar lai str. 56601

+ Treponema denticola ATCC 35405

+ Treponema pallidum

+ Treponema pallidum subsp. pallidum SS14, SS14

+ COG functional categories

+ (Clickable) linear whole genome views

+ Horizontal gene transfer (predicted by SIGI-HMM)

+ Sequence retrieval

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+ Sequence similarity search

+ Best bidirectional hits (protein-based analysis)

+ Gene core sets (protein-based analysis)

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+ Protein variations (protein-based analysis)

+ Synteny analysis (protein-based analysis)

+ Gene conservation (protein-based analysis)

+ Codon and amino acid usages (DNA- and protein-based analysis)

+ Alignments of whole reference and target genomic elements (DNA-based analysis)

Gene list

Applied filters:

Genomic element: lp28-1

Number of genes found: 26

Free access


Show UniProt / TrEMBL protein name		View in Fasta format (DNA)		View in Fasta format (Protein)

Borrelia burgdorferi, B31

Name	Locus tag	Product / Description	Genomic element	Type	Begin	Length	Strand	GC-content
NA	BB_F13	conserved hypothetical protein	lp28-1	CDS	6632	750	-	0.229333
NA	BB_F01	erpD protein, putative	lp28-1	CDS	467	999	+	0.298298
NA	BB_F27	predicted coding region BBF27	lp28-1	CDS	15755	171	-	0.25731
NA	BB_F06	conserved hypothetical protein	lp28-1	CDS	3201	180	+	0.266667
NA	BB_F03	conserved hypothetical protein	lp28-1	CDS	2098	522	-	0.285441
NA	BB_F30	predicted coding region BBF30	lp28-1	CDS	17167	249	-	0.257028
NA	BB_F17	predicted coding region BBF17	lp28-1	CDS	8772	258	+	0.244186
NA	BB_F24	conserved hypothetical protein	lp28-1	CDS	13029	765	-	0.264052
NA	BB_F25	conserved hypothetical protein	lp28-1	CDS	13769	561	-	0.224599
NA	BB_F09	predicted coding region BBF09	lp28-1	CDS	4027	156	+	0.275641
NA	BB_F20	conserved hypothetical protein	lp28-1	CDS	10698	294	-	0.241497
NA	BB_F05	predicted coding region BBF05	lp28-1	CDS	2777	300	+	0.233333
NA	BB_F08	predicted coding region BBF08	lp28-1	CDS	3682	168	-	0.244048
NA	BB_F21	predicted coding region BBF21	lp28-1	CDS	11446	105	-	0.257143
NA	BB_F22	protein p23, putative	lp28-1	CDS	11791	228	-	0.267544
NA	BB_F11	predicted coding region BBF11	lp28-1	CDS	5435	108	+	0.194444
NA	BB_F10	predicted coding region BBF10	lp28-1	CDS	4488	498	+	0.307229
NA	BB_F23	conserved hypothetical protein	lp28-1	CDS	12441	552	-	0.262681
NA	BB_F15	predicted coding region BBF15	lp28-1	CDS	8239	132	+	0.234848
NA	BB_F26	conserved hypothetical protein	lp28-1	CDS	14351	1101	-	0.223433
NA	BB_F16	predicted coding region BBF16	lp28-1	CDS	8389	186	+	0.231183
NA	BB_F07	predicted coding region BBF07	lp28-1	CDS	3410	120	-	0.258333
NA	BB_F04	predicted coding region BBF04	lp28-1	CDS	2658	150	+	0.273333
NA	BB_F14	conserved hypothetical protein	lp28-1	CDS	7354	558	-	0.216846
NA	BB_F02	conserved hypothetical protein	lp28-1	CDS	1720	357	+	0.246499
NA	BB_F28	predicted coding region BBF28	lp28-1	CDS	15998	132	-	0.401515