SGB - The Spirochetes Genome Browser - Gene list

Title

+ Borrelia afzelii, PKo

+ Borrelia burgdorferi ZS7, ZS7

+ Borrelia burgdorferi, B31

+ Borrelia duttonii Ly, Ly

+ Borrelia garinii High passage (300), PBi

+ Borrelia garinii, PBi

+ Borrelia hermsii DAH, DAH

+ Borrelia recurrentis A1, A1

+ Borrelia turicatae 91E135, 91E135

+ Leptospira biflexa serovar Patoc strain Patoc 1 (Ames), Patoc 1 (Ames)

+ Leptospira biflexa serovar Patoc strain Patoc 1 (Paris), Patoc 1 (Paris)

+ Leptospira borgpetersenii serovar Hardjo-bovis JB197, JB197

+ Leptospira borgpetersenii serovar Hardjo-bovis L550, L550

+ Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130

+ Leptospira interrogans serovar lai str. 56601

+ Treponema denticola ATCC 35405

+ Treponema pallidum

+ Treponema pallidum subsp. pallidum SS14, SS14

+ COG functional categories

+ (Clickable) linear whole genome views

+ Horizontal gene transfer (predicted by SIGI-HMM)

+ Sequence retrieval

+ Advanced search

+ Sequence similarity search

+ Best bidirectional hits (protein-based analysis)

+ Gene core sets (protein-based analysis)

+ Gene partnerships (DNA-based analysis)

+ Protein variations (protein-based analysis)

+ Synteny analysis (protein-based analysis)

+ Gene conservation (protein-based analysis)

+ Codon and amino acid usages (DNA- and protein-based analysis)

+ Alignments of whole reference and target genomic elements (DNA-based analysis)

Gene list

Applied filters:

Genomic element: pl15

Number of genes found: 14

Free access


Show UniProt / TrEMBL protein name		View in Fasta format (DNA)		View in Fasta format (Protein)

Borrelia duttonii Ly, Ly

Name	Locus tag	Product / Description	Genomic element	Type	Begin	Length	Strand	GC-content
NA	BDU_15005	uncharacterized conserved protein	pl15	CDS	4440	531	+	0.344633
NA	BDU_15014		pl15	pseudo	14253	795	+	0.396226
NA	BDU_15002	uncharacterized conserved protein	pl15	CDS	829	546	-	0.307692
NA	BDU_15006	uncharacterized conserved protein	pl15	CDS	5002	372	+	0.325269
NA	BDU_15003	uncharacterized conserved protein	pl15	CDS	1371	1656	-	0.308575
NA	BDU_15004	transposase IS605 OrfB	pl15	CDS	3234	1140	+	0.269298
bdr_1	BDU_15001	bdr protein	pl15	CDS	241	525	+	0.228571
bdr_2	BDU_15007	bdr protein	pl15	CDS	5700	639	-	0.234742
pf32	BDU_15010	PF32 plasmid partition protein	pl15	CDS	8335	753	+	0.257636
pf49	BDU_15011	PF49 plasmid partition protein	pl15	CDS	9132	525	+	0.222857
ppap1	BDU_15009	plasmid partitioning associated protein-1	pl15	CDS	7799	561	+	0.242424
ppap2	BDU_15008	ORFe-like protein, plasmid partitioning associated protein-2	pl15	CDS	6683	1107	+	0.247516
vlp-c	BDU_15012	vlp protein, gamma subfamily	pl15	CDS	11274	1071	+	0.387488
vsp	BDU_15013	vsp protein	pl15	CDS	12569	714	+	0.382353