SGB - The Spirochetes Genome Browser - Gene list

Title

+ Borrelia afzelii, PKo

+ Borrelia burgdorferi ZS7, ZS7

+ Borrelia burgdorferi, B31

+ Borrelia duttonii Ly, Ly

+ Borrelia garinii High passage (300), PBi

+ Borrelia garinii, PBi

+ Borrelia hermsii DAH, DAH

+ Borrelia recurrentis A1, A1

+ Borrelia turicatae 91E135, 91E135

+ Leptospira biflexa serovar Patoc strain Patoc 1 (Ames), Patoc 1 (Ames)

+ Leptospira biflexa serovar Patoc strain Patoc 1 (Paris), Patoc 1 (Paris)

+ Leptospira borgpetersenii serovar Hardjo-bovis JB197, JB197

+ Leptospira borgpetersenii serovar Hardjo-bovis L550, L550

+ Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130

+ Leptospira interrogans serovar lai str. 56601

+ Treponema denticola ATCC 35405

+ Treponema pallidum

+ Treponema pallidum subsp. pallidum SS14, SS14

+ COG functional categories

+ (Clickable) linear whole genome views

+ Horizontal gene transfer (predicted by SIGI-HMM)

+ Sequence retrieval

+ Advanced search

+ Sequence similarity search

+ Best bidirectional hits (protein-based analysis)

+ Gene core sets (protein-based analysis)

+ Gene partnerships (DNA-based analysis)

+ Protein variations (protein-based analysis)

+ Synteny analysis (protein-based analysis)

+ Gene conservation (protein-based analysis)

+ Codon and amino acid usages (DNA- and protein-based analysis)

+ Alignments of whole reference and target genomic elements (DNA-based analysis)

Gene list

Applied filters:

Genomic element: pl23b

Number of genes found: 15

Free access


Show UniProt / TrEMBL protein name		View in Fasta format (DNA)		View in Fasta format (Protein)

Borrelia duttonii Ly, Ly

Name	Locus tag	Product / Description	Genomic element	Type	Begin	Length	Strand	GC-content
NA	BDU_14003	multidrug-efflux transporter	pl23b	CDS	3555	1182	-	0.214044
NA	BDU_14010		pl23b	pseudo	13449	865	+	0.381503
NA	BDU_14002	uncharacterized conserved protein	pl23b	CDS	1930	825	+	0.298182
NA	BDU_14008		pl23b	pseudo	10770	792	+	0.387626
NA	BDU_14012		pl23b	pseudo	15706	1014	+	0.363905
NA	BDU_14004	uncharacterized conserved protein	pl23b	CDS	4733	1080	-	0.233333
NA	BDU_14001	uncharacterized conserved protein	pl23b	CDS	1	1615	-	0.291022
pf32	BDU_14006	PF32 plasmid partition protein	pl23b	CDS	6817	762	-	0.262467
pf49	BDU_14005	PF49 plasmid partition protein	pl23b	CDS	6254	561	-	0.213904
vlp-b	BDU_14007	vlp protein, beta subfamily	pl23b	CDS	9009	1302	+	0.350998
vlp-d_1	BDU_14014	vlp protein, delta subfamily	pl23b	CDS	18673	1068	+	0.364232
vlp-d_2	BDU_14015	vlp protein, delta subfamily	pl23b	CDS	19929	1068	+	0.36985
vlp_1	BDU_14009	vlp protein	pl23b	CDS	11729	1104	+	0.375
vlp_2	BDU_14013	vlp protein	pl23b	CDS	16977	981	+	0.367992
vsp	BDU_14011	vsp protein	pl23b	CDS	14511	648	+	0.356481