SGB - The Spirochetes Genome Browser - Gene list

Title

+ Borrelia afzelii, PKo

+ Borrelia burgdorferi ZS7, ZS7

+ Borrelia burgdorferi, B31

+ Borrelia duttonii Ly, Ly

+ Borrelia garinii High passage (300), PBi

+ Borrelia garinii, PBi

+ Borrelia hermsii DAH, DAH

+ Borrelia recurrentis A1, A1

+ Borrelia turicatae 91E135, 91E135

+ Leptospira biflexa serovar Patoc strain Patoc 1 (Ames), Patoc 1 (Ames)

+ Leptospira biflexa serovar Patoc strain Patoc 1 (Paris), Patoc 1 (Paris)

+ Leptospira borgpetersenii serovar Hardjo-bovis JB197, JB197

+ Leptospira borgpetersenii serovar Hardjo-bovis L550, L550

+ Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130

+ Leptospira interrogans serovar lai str. 56601

+ Treponema denticola ATCC 35405

+ Treponema pallidum

+ Treponema pallidum subsp. pallidum SS14, SS14

+ COG functional categories

+ (Clickable) linear whole genome views

+ Horizontal gene transfer (predicted by SIGI-HMM)

+ Sequence retrieval

+ Advanced search

+ Sequence similarity search

+ Best bidirectional hits (protein-based analysis)

+ Gene core sets (protein-based analysis)

+ Gene partnerships (DNA-based analysis)

+ Protein variations (protein-based analysis)

+ Synteny analysis (protein-based analysis)

+ Gene conservation (protein-based analysis)

+ Codon and amino acid usages (DNA- and protein-based analysis)

+ Alignments of whole reference and target genomic elements (DNA-based analysis)

Gene list

Applied filters:

Genomic element: pl33

Number of genes found: 30

Free access


Show UniProt / TrEMBL protein name		View in Fasta format (DNA)		View in Fasta format (Protein)

Borrelia recurrentis A1, A1

Name	Locus tag	Product / Description	Genomic element	Type	Begin	Length	Strand	GC-content
NA	BRE_5026		pl33	pseudo	26611	919	+	0.367791
NA	BRE_5021		pl33	pseudo	21052	216	+	0.25463
NA	BRE_5008		pl33	pseudo	7724	577	-	0.259965
NA	BRE_5028		pl33	pseudo	28882	931	+	0.392052
NA	BRE_5022		pl33	pseudo	21443	1041	+	0.269933
NA	BRE_5009	uncharacterized conserved protein	pl33	CDS	8521	678	+	0.231563
NA	BRE_5005		pl33	pseudo	3785	306	-	0.352941
NA	BRE_5014	putative lipoprotein	pl33	CDS	13336	888	+	0.268018
NA	BRE_5007		pl33	pseudo	6274	1252	-	0.345048
NA	BRE_5024		pl33	pseudo	23911	1063	+	0.37159
NA	BRE_5003	uncharacterized conserved protein	pl33	CDS	1694	306	-	0.277778
NA	BRE_5004		pl33	pseudo	2337	886	-	0.266366
NA	BRE_5019		pl33	pseudo	18558	1026	+	0.401559
NA	BRE_5002	uncharacterized conserved protein	pl33	CDS	1164	243	-	0.296296
NA	BRE_5015	putative lipoprotein	pl33	CDS	14439	531	-	0.290019
NA	BRE_5013		pl33	pseudo	11415	931	+	0.344791
NA	BRE_5017		pl33	pseudo	16684	323	+	0.337461
NA	BRE_5006		pl33	pseudo	4965	926	-	0.361771
NA	BRE_5016	uncharacterized conserved protein	pl33	CDS	15782	594	+	0.281145
NA	BRE_5020	ORFk-like protein, lipoprotein	pl33	CDS	20211	708	-	0.258475
bdr_1	BRE_5001	BdrQ-like protein	pl33	CDS	375	510	-	0.290196
bdr_2	BRE_5023	bdr proitein	pl33	CDS	22497	819	+	0.257631
bdr_3	BRE_5025	bdr proitein	pl33	CDS	25763	471	+	0.261146
pf32	BRE_5011	PF32 plasmid partition protein	pl33	CDS	9760	753	+	0.269588
pf49	BRE_5012	PF49 plasmid partition protein	pl33	CDS	10535	600	+	0.231667
ppap1	BRE_5010	plasmid partitioning associated protein-1	pl33	CDS	9182	603	+	0.268657
vlp-d_1	BRE_5018	vlp protein, delta subfamily	pl33	CDS	17194	1047	+	0.373448
vlp-d_2	BRE_5029	vlp protein, delta subfamily	pl33	CDS	29972	1113	+	0.387242
vsp_1	BRE_5027	vsp protein	pl33	CDS	27849	612	+	0.382353
vsp_2	BRE_5030	vsp protein	pl33	CDS	31362	582	+	0.376289