Gene list
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COG category: Replication, recombination and repair
Organism: Leptospira biflexa serovar Patoc strain Patoc 1 (Ames), Patoc 1 (Ames)
Number of genes found: 103
Show UniProt / TrEMBL protein name | View in Fasta format (DNA) | View in Fasta format (Protein) | ||||
Leptospira biflexa serovar Patoc strain Patoc 1 (Ames), Patoc 1 (Ames) | ||||||||
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Name | Locus tag | Product / Description | Genomic element | Type | Begin | Length | Strand | GC-content |
NA | LBF_4236 | Conserved hypothetical protein | chromosome II | CDS | 236875 | 1230 | - | 0.356911 |
NA | LBF_0987 | Endonuclease III related protein | chromosome I | CDS | 1070280 | 642 | + | 0.461059 |
NA | LBF_3322 | DNA/RNA helicase Superfamily II | chromosome I | CDS | 3567728 | 2847 | + | 0.361433 |
NA | LBF_2982 | Transposase, IS30 family | chromosome I | CDS | 3212031 | 993 | + | 0.35146 |
NA | LBF_1172 | Transposase | chromosome I | CDS | 1274181 | 621 | + | 0.344605 |
NA | LBF_2015 | Hypothetical protein with a MutT/nudix family-like C-terminal domain | chromosome I | CDS | 2163480 | 543 | + | 0.412523 |
NA | LBF_0166 | NUDIX domain protein | chromosome I | CDS | 170263 | 627 | - | 0.432217 |
NA | LBF_0657 | DNA topoisomerase (ATP-hydrolyzing), subunit B | chromosome I | CDS | 691746 | 2127 | + | 0.406676 |
NA | LBF_0780 | Hypothetical protein | chromosome I | CDS | 828874 | 297 | + | 0.417508 |
NA | LBF_1236 | Conserved hypothetical protein with Smr domain | chromosome I | CDS | 1352089 | 276 | + | 0.456522 |
NA | LBF_2247 | Exonuclease | chromosome I | CDS | 2387990 | 759 | - | 0.362319 |
NA | LBF_1739 | N6-adenine-specific DNA methylase | chromosome I | CDS | 1875558 | 1077 | + | 0.400186 |
NA | LBF_0514 | N6-adenine-specific methylase | chromosome I | CDS | 534569 | 615 | + | 0.38374 |
NA | LBF_1619 | Endonuclease | chromosome I | CDS | 1746910 | 345 | + | 0.373913 |
NA | LBF_4130 | HrpA-like helicase | chromosome II | CDS | 129745 | 2466 | - | 0.380373 |
NA | LBF_0338 | ATP-dependent DNA helicase, recG-related | chromosome I | CDS | 353503 | 2061 | + | 0.388646 |
NA | LBF_3156 | XerD-like Integrase/recombinase | chromosome I | CDS | 3391387 | 660 | + | 0.418182 |
NA | LBF_2734 | Superfamily II DNA and RNA helicase | chromosome I | CDS | 2927765 | 1416 | - | 0.410311 |
NA | LBF_2297 | conserved hypothetical protein | chromosome I | CDS | 2443029 | 1680 | - | 0.390476 |
NA | LBF_5032 | Helicase | p74 | CDS | 43227 | 4944 | - | 0.408576 |
NA | LBF_0656 | DNA topoisomerase (ATP-hydrolyzing), subunit A | chromosome I | CDS | 690369 | 1371 | + | 0.390226 |
NA | LBF_1666 | DNA helicase | chromosome I | CDS | 1795689 | 1986 | + | 0.382679 |
NA | LBF_2110 | ATP-dependent endonuclease | chromosome I | CDS | 2261390 | 1377 | + | 0.318083 |
NA | LBF_0549 | Methylated DNA-protein cysteine methyltransferase | chromosome I | CDS | 573982 | 294 | - | 0.37415 |
NA | LBF_1241 | helicase-like ATPase | chromosome I | CDS | 1355334 | 1260 | + | 0.461111 |
NA | LBF_0324 | DNA mismatch repair protein ATPase component | chromosome I | CDS | 340555 | 1818 | - | 0.351485 |
NA | LBF_3173 | Hypothetical protein | chromosome I | CDS | 3407071 | 423 | - | 0.330969 |
NA | LBF_2873 | Single-strand DNA binding protein family | chromosome I | CDS | 3086806 | 354 | - | 0.39548 |
NA | LBF_1075 | HNH nuclease | chromosome I | CDS | 1168716 | 294 | - | 0.377551 |
NA | LBF_2464 | DNA or RNA helicase of superfamily II | chromosome I | CDS | 2639085 | 1698 | - | 0.425206 |
NA | LBF_2951 | Hypothetical protein | chromosome I | CDS | 3176770 | 816 | + | 0.447304 |
NA | LBF_0048 | Transposase | chromosome I | CDS | 49890 | 993 | - | 0.349446 |
NA | LBF_1326 | DNA and RNA helicase subunit | chromosome I | CDS | 1441453 | 1827 | - | 0.396825 |
NA | LBF_2114 | ATP-dependent endonuclease | chromosome I | CDS | 2267062 | 1464 | + | 0.335383 |
NA | LBF_2452 | Conserved hypothetical protein | chromosome I | CDS | 2624134 | 1098 | - | 0.326047 |
NA | LBF_2626 | Conserved hypothetical protein | chromosome I | CDS | 2813089 | 3231 | + | 0.421541 |
NA | LBF_1847 | Hypothetical protein | chromosome I | CDS | 1999635 | 774 | + | 0.423773 |
NA | LBF_2082 | Superfamily II DNA and RNA helicase | chromosome I | CDS | 2233540 | 1590 | - | 0.433962 |
NA | LBF_2310 | DNA helicase-related protein | chromosome I | CDS | 2457204 | 1284 | + | 0.367601 |
NA | LBF_1291 | DNA methylase | chromosome I | CDS | 1404916 | 1158 | + | 0.38601 |
NA | LBF_4035 | DNA-binding protein, IHF-related | chromosome II | CDS | 35189 | 306 | + | 0.392157 |
NA | LBF_0730 | DNA or RNA helicase of superfamily II | chromosome I | CDS | 774152 | 3141 | - | 0.351799 |
ada | LBF_4131 | Methylated-DNA--[protein]-cysteine S- methyltransferase | chromosome II | CDS | 132329 | 861 | + | 0.390244 |
alkB | LBF_3071 | Alkylated DNA repair protein | chromosome I | CDS | 3302859 | 609 | - | 0.385879 |
dinP | LBF_4145 | DNA damage-inducible protein DNA polymerase | chromosome II | CDS | 146606 | 1077 | - | 0.376045 |
dnaA | LBF_0004 | Chromosomal replication initiator protein | chromosome I | CDS | 4188 | 1326 | + | 0.394419 |
dnaB | LBF_2042 | Replicative DNA helicase | chromosome I | CDS | 2197086 | 1344 | - | 0.438988 |
dnaC | LBF_0260 | DNA replication protein | chromosome I | CDS | 268752 | 864 | + | 0.425926 |
dnaE | LBF_2837 | DNA-directed DNA polymerase, alpha subunit | chromosome I | CDS | 3041794 | 3522 | - | 0.390119 |
dnaG | LBF_1514 | DNA primase | chromosome I | CDS | 1637437 | 1812 | + | 0.415011 |
dnaN | LBF_0005 | DNA-directed DNA polymerase, beta subunit | chromosome I | CDS | 5760 | 1119 | + | 0.364611 |
dnaX-1 | LBF_0003 | DNA polymerase III gamma and tau subunits | chromosome I | CDS | 2975 | 933 | + | 0.386924 |
dnaX-2 | LBF_3346 | DNA polymerase III, gamma and tau subunits | chromosome I | CDS | 3588009 | 1479 | + | 0.366464 |
dprA | LBF_0667 | DNA processing protein A | chromosome I | CDS | 703478 | 927 | + | 0.413161 |
dps | LBF_2460 | DNA-binding ferritin-like protein | chromosome I | CDS | 2635330 | 471 | + | 0.420382 |
gyrA | LBF_0009 | DNA gyrase subunit A | chromosome I | CDS | 10319 | 2532 | + | 0.401659 |
gyrB | LBF_0008 | DNA gyrase subunit B | chromosome I | CDS | 8380 | 1920 | + | 0.405729 |
lig | LBF_0211 | DNA ligase (NAD+) (contains BRCT domain type II) | chromosome I | CDS | 211325 | 2016 | - | 0.402778 |
mfd | LBF_1770 | Transcription-repair coupling factor | chromosome I | CDS | 1911714 | 3423 | - | 0.378907 |
mutL | LBF_2096 | DNA mismatch repair enzyme (predicted ATPase) | chromosome I | CDS | 2244981 | 1845 | - | 0.463415 |
mutS | LBF_0802 | DNA mismatch repair ATPase | chromosome I | CDS | 851335 | 2523 | - | 0.383274 |
mutY | LBF_1233 | A/G-specific DNA glycosylase | chromosome I | CDS | 1347838 | 1062 | + | 0.38983 |
nudH | LBF_3212 | NTP pyrophosphohydrolase | chromosome I | CDS | 3445536 | 492 | + | 0.373984 |
phrB | LBF_2340 | Deoxyribodipyrimidine photolyase | chromosome I | CDS | 2487944 | 1572 | + | 0.375954 |
polA | LBF_0651 | DNA-directed DNA polymerase | chromosome I | CDS | 683237 | 2829 | - | 0.376458 |
polB | LBF_2104 | DNA-directed DNA polymerase | chromosome I | CDS | 2254410 | 2664 | + | 0.353979 |
priA | LBF_1606 | Primosomal protein N' | chromosome I | CDS | 1737111 | 1953 | + | 0.409626 |
recA | LBF_2374 | RecA recombinase | chromosome I | CDS | 2527827 | 1164 | + | 0.454467 |
recB | LBF_5019 | Exodeoxyribonuclease V, beta subunit | p74 | CDS | 18545 | 3630 | - | 0.371625 |
recC | LBF_5020 | Exodeoxyribonuclease V, gamma subunit | p74 | CDS | 22171 | 3300 | - | 0.356667 |
recD | LBF_5018 | Exodeoxyribonuclease V, alpha subunit | p74 | CDS | 16746 | 1803 | - | 0.374931 |
recF | LBF_0006 | Recombinational DNA repair ATPase | chromosome I | CDS | 6878 | 1104 | + | 0.356884 |
recJ | LBF_1255 | Single-stranded DNA-specific exonuclease | chromosome I | CDS | 1368969 | 1989 | - | 0.409251 |
recN | LBF_1580 | DNA repair protein | chromosome I | CDS | 1709041 | 1710 | + | 0.438012 |
recO | LBF_2037 | Recombinational DNA repair protein | chromosome I | CDS | 2190685 | 750 | - | 0.392 |
recQ-1 | LBF_0300 | DNA helicase, Superfamily II | chromosome I | CDS | 312534 | 1857 | - | 0.430802 |
recQ-2 | LBF_2428 | ATP-dependent DNA helicase | chromosome I | CDS | 2594081 | 1446 | - | 0.377593 |
recR | LBF_3348 | Recombinational DNA repair protein | chromosome I | CDS | 3589851 | 609 | + | 0.377668 |
rnhA | LBF_2748 | Ribonuclease HI | chromosome I | CDS | 2946875 | 414 | + | 0.374396 |
rnhB | LBF_1615 | Ribonuclease H | chromosome I | CDS | 1743867 | 741 | + | 0.441296 |
ruvA | LBF_1447 | Holliday junction specific DNA binding protein | chromosome I | CDS | 1566535 | 600 | - | 0.391667 |
ruvB | LBF_0505 | Holliday junction DNA helicase | chromosome I | CDS | 528513 | 1026 | + | 0.489279 |
ruvC | LBF_3203 | Crossover junction endoribonuclease | chromosome I | CDS | 3439967 | 477 | + | 0.484277 |
sbcD | LBF_2807 | DNA repair exonuclease | chromosome I | CDS | 3009746 | 1092 | - | 0.391941 |
splB | LBF_0608 | DNA repair photolyase | chromosome I | CDS | 644032 | 999 | - | 0.357357 |
srmB | LBF_4201 | ATP-dependent RNA helicase (superfamily II) | chromosome II | CDS | 209180 | 1590 | + | 0.438365 |
ssb | LBF_2045 | Single-stranded DNA-binding protein | chromosome I | CDS | 2199263 | 444 | - | 0.439189 |
tatD | LBF_3353 | Mg-dependent DNase | chromosome I | CDS | 3595824 | 810 | - | 0.375309 |
topA | LBF_1122 | DNA topoisomerase | chromosome I | CDS | 1215499 | 1878 | + | 0.355165 |
ung | LBF_0791 | Uracil DNA glycosylase | chromosome I | CDS | 840274 | 657 | - | 0.374429 |
uvrA | LBF_1784 | Excinuclease ABC, subunit A | chromosome I | CDS | 1931289 | 2865 | - | 0.431414 |
uvrB | LBF_0814 | Helicase subunit of the DNA excision repair complex | chromosome I | CDS | 862948 | 1995 | + | 0.390476 |
uvrC | LBF_2022 | Excinuclease ABC, subunit C | chromosome I | CDS | 2173439 | 1845 | - | 0.404336 |
uvrD-1 | LBF_1584 | ATP-dependent DNA helicase | chromosome I | CDS | 1714762 | 2184 | + | 0.36859 |
uvrD-2 | LBF_1683 | ATP-dependent DNA helicase | chromosome I | CDS | 1816196 | 1995 | + | 0.368421 |
uvrD-3 | LBF_2013 | DNA/RNA helicase UvrD | chromosome I | CDS | 2160667 | 2016 | - | 0.441964 |
xerC | LBF_2373 | Tyrosine site-specific recombinase XerC | chromosome I | CDS | 2526594 | 936 | - | 0.382479 |
xerC-1 | LBF_0454 | Tyrosine site-specific recombinase XerC | chromosome I | CDS | 471278 | 1287 | - | 0.362859 |
xerD | LBF_2287 | Site-specific recombinase XerD | chromosome I | CDS | 2432035 | 909 | - | 0.382838 |
xerD-1 | LBF_1161 | Site-specific recombinase XerD | chromosome I | CDS | 1262829 | 897 | - | 0.329989 |
xseA | LBF_1805 | Exodeoxyribonuclease VII, large subunit | chromosome I | CDS | 1956029 | 1296 | + | 0.415895 |
xseB | LBF_1806 | Exodeoxyribonuclease VII, small subunit | chromosome I | CDS | 1957314 | 276 | + | 0.358696 |
xthA | LBF_1776 | Exodeoxyribonuclease III | chromosome I | CDS | 1923508 | 771 | + | 0.411154 |