Gene list
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COG category: Replication, recombination and repair
Organism: Treponema denticola ATCC 35405
Number of genes found: 135
Show UniProt / TrEMBL protein name | View in Fasta format (DNA) | View in Fasta format (Protein) | ||||
Treponema denticola ATCC 35405 | ||||||||
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Name | Locus tag | Product / Description | Genomic element | Type | Begin | Length | Strand | GC-content |
NA | TDE2587 | endonuclease/exonuclease/phosphatase family protein | chromosome | CDS | 2622331 | 1020 | + | 0.40098 |
NA | TDE2742 | site-specific recombinase, phage integrase family | chromosome | CDS | 2796940 | 810 | - | 0.393827 |
NA | TDE0085 | ATP-dependent DNA helicase, UvrD/Rep family | chromosome | CDS | 97686 | 3420 | - | 0.332749 |
NA | TDE0506 | DNA-damage-inducible protein J, putative | chromosome | CDS | 558535 | 273 | - | 0.326007 |
NA | TDE2463 | hypothetical protein | chromosome | CDS | 2488630 | 624 | + | 0.38141 |
NA | TDE2219 | membrane protein, putative | chromosome | CDS | 2259051 | 1686 | - | 0.396797 |
NA | TDE0229 | ATPase family protein | chromosome | CDS | 260956 | 1881 | - | 0.246677 |
NA | TDE0730 | hypothetical protein | chromosome | CDS | 769286 | 1392 | - | 0.324713 |
NA | TDE0966 | hydrolase, TatD family | chromosome | CDS | 991490 | 822 | - | 0.358881 |
NA | TDE1022 | ISTde2, transposase | chromosome | CDS | 1054002 | 1077 | - | 0.317549 |
NA | TDE1825 | hypothetical protein | chromosome | CDS | 1857340 | 1095 | - | 0.276712 |
NA | TDE0266 | conserved hypothetical protein | chromosome | CDS | 297857 | 792 | - | 0.310606 |
NA | TDE1752 | ISTde2, transposase | chromosome | CDS | 1804412 | 1077 | - | 0.31662 |
NA | TDE1999 | DNA polymerase III domain protein | chromosome | CDS | 2017203 | 654 | + | 0.437309 |
NA | TDE2734 | hypothetical protein | chromosome | CDS | 2789211 | 711 | + | 0.523207 |
NA | TDE2586 | DNA polymerase III, gamma and tau subunits, putative | chromosome | CDS | 2620341 | 1839 | - | 0.430669 |
NA | TDE2592 | DbpA RNA binding domain protein | chromosome | CDS | 2627166 | 627 | + | 0.374801 |
NA | TDE0170 | nuclease SbcCD, D subunit, putative | chromosome | CDS | 198929 | 1152 | + | 0.405382 |
NA | TDE0721 | hypothetical protein | chromosome | CDS | 756891 | 1386 | + | 0.251804 |
NA | TDE0435 | ATP-dependent DNA helicase, RecQ family | chromosome | CDS | 489648 | 1704 | - | 0.441315 |
NA | TDE2266 | reverse transcriptase family protein | chromosome | CDS | 2303132 | 987 | - | 0.321175 |
NA | TDE0099 | adenine-specific DNA modification methyltransferase | chromosome | CDS | 115788 | 1287 | + | 0.353535 |
NA | TDE1709 | DNA-binding protein, HU family | chromosome | CDS | 1764909 | 321 | - | 0.398754 |
NA | TDE1891 | conserved hypothetical protein | chromosome | CDS | 1911346 | 765 | + | 0.330719 |
NA | TDE2265 | hypothetical protein | chromosome | CDS | 2302305 | 390 | + | 0.358974 |
NA | TDE2303 | conserved hypothetical protein | chromosome | CDS | 2343195 | 393 | + | 0.343511 |
NA | TDE0006 | Snf2 family protein | chromosome | CDS | 6200 | 3585 | - | 0.407252 |
NA | TDE1280 | conserved hypothetical protein | chromosome | CDS | 1315840 | 702 | - | 0.366097 |
NA | TDE0706 | adenine-specific DNA modification methyltransferase | chromosome | CDS | 740560 | 1113 | + | 0.319856 |
NA | TDE1786 | hypothetical protein | chromosome | CDS | 1825195 | 1044 | - | 0.241379 |
NA | TDE1137 | conserved hypothetical protein | chromosome | CDS | 1166156 | 684 | - | 0.323099 |
NA | TDE1654 | ATP-dependent helicase HrpA, putative | chromosome | CDS | 1702359 | 2613 | + | 0.41217 |
NA | TDE2486 | hypothetical protein | chromosome | CDS | 2509377 | 555 | + | 0.259459 |
NA | TDE0193 | conserved hypothetical protein | chromosome | CDS | 228703 | 1977 | - | 0.3217 |
NA | TDE0302 | conserved hypothetical protein | chromosome | CDS | 333363 | 279 | + | 0.333333 |
NA | TDE0010 | MutT/nudix family protein | chromosome | CDS | 14720 | 567 | + | 0.396825 |
NA | TDE2472 | ISTde1, transposase | chromosome | CDS | 2495102 | 1185 | + | 0.348523 |
NA | TDE2679 | conserved hypothetical protein | chromosome | CDS | 2719658 | 885 | + | 0.314124 |
NA | TDE1621 | conserved hypothetical protein | chromosome | CDS | 1669043 | 1791 | - | 0.340034 |
NA | TDE1971 | DNA polymerase III domain protein | chromosome | CDS | 1985831 | 1290 | - | 0.391473 |
NA | TDE0556 | hypothetical protein | chromosome | CDS | 591628 | 555 | - | 0.4 |
NA | TDE0086 | conserved hypothetical protein | chromosome | CDS | 101129 | 2838 | - | 0.324524 |
NA | TDE2588 | integrase domain protein | chromosome | CDS | 2623636 | 1203 | + | 0.39069 |
NA | TDE2033 | ISTde1, transposase | chromosome | CDS | 2060382 | 1185 | - | 0.348523 |
NA | TDE0729 | conserved hypothetical protein | chromosome | CDS | 768198 | 1017 | - | 0.352999 |
NA | TDE1620 | hypothetical protein | chromosome | CDS | 1667049 | 2004 | - | 0.33982 |
NA | TDE0016 | ATPase, AAA family | chromosome | CDS | 20597 | 1326 | + | 0.450226 |
NA | TDE2705 | ISTde3, transposase | chromosome | CDS | 2751217 | 639 | - | 0.314554 |
NA | TDE1875 | hypothetical protein | chromosome | CDS | 1895896 | 1101 | - | 0.333333 |
NA | TDE2244 | conserved hypothetical protein | chromosome | CDS | 2283160 | 1221 | + | 0.353808 |
NA | TDE2221 | conserved hypothetical protein | chromosome | CDS | 2262824 | 1035 | + | 0.355556 |
NA | TDE2751 | conserved hypothetical protein | chromosome | CDS | 2807710 | 1545 | + | 0.390939 |
NA | TDE2335 | ATP-dependent DNA helicase, UvrD/Rep family | chromosome | CDS | 2369781 | 2238 | + | 0.424486 |
NA | TDE2581 | hypothetical protein | chromosome | CDS | 2610922 | 771 | + | 0.246433 |
NA | TDE2730 | hydrolase, TatD family | chromosome | CDS | 2786726 | 774 | + | 0.427649 |
NA | TDE1991 | conserved hypothetical protein | chromosome | CDS | 2008724 | 765 | - | 0.29281 |
NA | TDE2135 | conserved hypothetical protein | chromosome | CDS | 2164726 | 753 | + | 0.298805 |
NA | TDE0363 | conserved hypothetical protein | chromosome | CDS | 409626 | 444 | - | 0.268018 |
NA | TDE1573 | DNA-damage-inducible protein J, putative | chromosome | CDS | 1621631 | 258 | - | 0.313953 |
NA | TDE2530 | radical SAM domain protein | chromosome | CDS | 2557502 | 828 | + | 0.359903 |
NA | TDE1844 | DNA integrase | chromosome | CDS | 1873287 | 1008 | - | 0.440476 |
NA | TDE2491 | DNA polymerase domain protein | chromosome | CDS | 2514795 | 795 | - | 0.466667 |
NA | TDE1990 | ATP-dependent helicase, DinG family | chromosome | CDS | 2006457 | 2130 | - | 0.399531 |
NA | TDE0039 | ISTde1, transposase | chromosome | CDS | 44579 | 1185 | - | 0.348523 |
NA | TDE1721 | radical SAM domain protein | chromosome | CDS | 1775280 | 909 | + | 0.458746 |
NA | TDE1209 | site-specific recombinase, phage integrase family | chromosome | CDS | 1242485 | 918 | + | 0.360566 |
NA | TDE0663 | conserved hypothetical protein | chromosome | CDS | 697930 | 258 | - | 0.310078 |
NA | TDE2176 | site-specific recombinase, putative | chromosome | CDS | 2204491 | 1839 | - | 0.364328 |
NA | TDE1611 | conserved domain protein | chromosome | CDS | 1659841 | 654 | + | 0.288991 |
NA | TDE0171 | nuclease SbcCD, C subunit, putative | chromosome | CDS | 200105 | 3093 | + | 0.396056 |
NA | TDE2015 | lipoprotein, putative | chromosome | CDS | 2036501 | 1122 | - | 0.262923 |
NA | TDE0738 | conserved hypothetical protein | chromosome | CDS | 775764 | 261 | - | 0.35249 |
NA | TDE1881 | methyltransferase, putative | chromosome | CDS | 1903140 | 552 | + | 0.396739 |
NA | TDE0227 | adenine-specific DNA modification methyltransferase | chromosome | CDS | 257076 | 2634 | + | 0.250949 |
NA | TDE2721 | helicase domain protein | chromosome | CDS | 2777923 | 1773 | - | 0.455161 |
NA | TDE0441 | hypothetical protein | chromosome | CDS | 496466 | 270 | - | 0.248148 |
NA | TDE0938 | conserved hypothetical protein | chromosome | CDS | 961053 | 1212 | - | 0.441419 |
NA | TDE1450 | MutS2 family protein | chromosome | CDS | 1495460 | 2457 | + | 0.404151 |
NA | TDE0140 | ISTde2, transposase | chromosome | CDS | 162871 | 1077 | + | 0.31662 |
NA | TDE2660 | conserved hypothetical protein | chromosome | CDS | 2697248 | 360 | - | 0.377778 |
NA | TDE2109 | ATP-dependent RNA helicase, DEAD/DEAH box family | chromosome | CDS | 2133665 | 1713 | - | 0.446001 |
NA | TDE1173 | site-specific recombinase, phage integrase family | chromosome | CDS | 1201347 | 1065 | - | 0.414084 |
NA | TDE2682 | conserved hypothetical protein | chromosome | CDS | 2721478 | 1971 | - | 0.411466 |
NA | TDE2118 | topoisomerase IV, A subunit, putative | chromosome | CDS | 2149244 | 2112 | - | 0.436553 |
NA | TDE0427 | hypothetical protein | chromosome | CDS | 483166 | 1374 | + | 0.283843 |
NA | TDE2245 | topoisomerase IV, B subunit, putative | chromosome | CDS | 2284380 | 1818 | + | 0.428493 |
NA | TDE2267 | HRDC domain protein | chromosome | CDS | 2304072 | 483 | - | 0.325052 |
NA | TDE0199 | hypothetical protein | chromosome | CDS | 234289 | 510 | - | 0.390196 |
NA | TDE1398 | conserved hypothetical protein | chromosome | CDS | 1437332 | 2187 | + | 0.400549 |
NA | TDE2505 | hypothetical protein | chromosome | CDS | 2530265 | 417 | + | 0.410072 |
NA | TDE1607 | MutT/nudix family protein | chromosome | CDS | 1657097 | 525 | - | 0.293333 |
NA | TDE1207 | DNA processing protein DprA, putative | chromosome | CDS | 1239376 | 933 | + | 0.39657 |
NA | TDE2029 | hydrolase, TatD family | chromosome | CDS | 2057238 | 855 | - | 0.422222 |
cas1 | TDE0328 | CRISPR-associated protein Cas1 | chromosome | CDS | 365205 | 873 | + | 0.327606 |
dinB | TDE0963 | DNA polymerase IV | chromosome | CDS | 986035 | 1188 | + | 0.367845 |
dnaA | TDE0001 | chromosomal replication initiator protein DnaA | chromosome | CDS | 166 | 1410 | - | 0.382979 |
dnaB | TDE1662 | replicative DNA helicase | chromosome | CDS | 1716038 | 1338 | + | 0.423767 |
dnaE | TDE2786 | DNA polymerase III, alpha subunit | chromosome | CDS | 2839313 | 3450 | - | 0.417971 |
dnaG | TDE1345 | DNA primase | chromosome | CDS | 1383579 | 1788 | + | 0.393736 |
dnaN | TDE0231 | DNA polymerase III, beta subunit | chromosome | CDS | 263980 | 1104 | - | 0.319746 |
gyrA | TDE0295 | DNA gyrase, A subunit | chromosome | CDS | 324310 | 2448 | - | 0.45098 |
gyrB | TDE0002 | DNA gyrase, B subunit | chromosome | CDS | 1684 | 1917 | + | 0.449139 |
ligA | TDE1538 | DNA ligase, NAD-dependent | chromosome | CDS | 1581708 | 1938 | + | 0.421569 |
mfd | TDE1287 | transcription-repair coupling factor | chromosome | CDS | 1322878 | 3468 | + | 0.400519 |
mutS | TDE2603 | DNA mismatch repair protein MutS | chromosome | CDS | 2641616 | 2676 | + | 0.433109 |
mutT | TDE0299 | mutator mutT protein | chromosome | CDS | 330220 | 420 | + | 0.366667 |
nth | TDE2534 | endonuclease III | chromosome | CDS | 2560284 | 633 | + | 0.407583 |
ogt | TDE0217 | methylated-DNA--protein-cysteinemethyltransferase | chromosome | CDS | 252688 | 519 | + | 0.34104 |
pcrA | TDE0903 | ATP-dependent DNA helicase PcrA | chromosome | CDS | 920368 | 1989 | + | 0.426345 |
polA | TDE1637 | DNA polymerase I | chromosome | CDS | 1686212 | 2811 | + | 0.421558 |
priA | TDE2490 | primosomal protein N' | chromosome | CDS | 2512793 | 1983 | - | 0.450328 |
radC | TDE0973 | DNA repair protein RadC | chromosome | CDS | 998030 | 678 | - | 0.435103 |
recA | TDE0872 | recA protein | chromosome | CDS | 894981 | 1245 | + | 0.460241 |
recF | TDE0230 | DNA replication and repair protein RecF | chromosome | CDS | 262889 | 1083 | - | 0.354571 |
recG | TDE2579 | ATP-dependent DNA helicase RecG | chromosome | CDS | 2603378 | 2037 | - | 0.459499 |
recJ | TDE2190 | single-stranded-DNA-specific exonuclease RecJ | chromosome | CDS | 2224251 | 2133 | - | 0.423347 |
recN | TDE1301 | DNA repair protein RecN | chromosome | CDS | 1337521 | 1686 | - | 0.414591 |
recO | TDE0436 | Recombination protein O | chromosome | CDS | 491414 | 810 | - | 0.432099 |
recQ | TDE0326 | ATP-dependent DNA helicase RecQ | chromosome | CDS | 358838 | 1881 | - | 0.397661 |
recR | TDE1549 | recombination protein RecR | chromosome | CDS | 1592280 | 588 | + | 0.438776 |
rnhA | TDE2570 | ribonuclease HI | chromosome | CDS | 2597515 | 483 | + | 0.447205 |
rnhB | TDE1547 | ribonuclease HII | chromosome | CDS | 1591264 | 597 | + | 0.358459 |
ruvA | TDE1863 | Holliday junction DNA helicase RuvA | chromosome | CDS | 1888064 | 606 | - | 0.438944 |
ruvB | TDE1914 | Holliday junction DNA helicase RuvB | chromosome | CDS | 1930979 | 1032 | - | 0.516473 |
ruvC | TDE1864 | crossover junction endodeoxyribonuclease RuvC | chromosome | CDS | 1888662 | 537 | - | 0.426443 |
ssb | TDE1677 | single-strand binding protein | chromosome | CDS | 1729773 | 507 | - | 0.455621 |
tdeIR | TDE1268 | type II restriction endonuclease TdeI | chromosome | CDS | 1303110 | 771 | - | 0.29572 |
topA | TDE1208 | DNA topoisomerase I | chromosome | CDS | 1240327 | 2166 | + | 0.371653 |
uvrA | TDE1010 | excinuclease ABC, A subunit | chromosome | CDS | 1035367 | 2865 | + | 0.464572 |
uvrB | TDE1369 | excinuclease ABC, B subunit | chromosome | CDS | 1409894 | 1989 | - | 0.42735 |
uvrC | TDE2478 | excinuclease ABC, C subunit | chromosome | CDS | 2501013 | 1959 | + | 0.444615 |
xerD | TDE1205 | integrase/recombinase XerD | chromosome | CDS | 1237829 | 825 | + | 0.349091 |
xseA | TDE1017 | exodeoxyribonuclease VII, large subunit | chromosome | CDS | 1048075 | 1197 | + | 0.440267 |
xseB | TDE2066 | exodeoxyribonuclease VII, small subunit | chromosome | CDS | 2092046 | 237 | + | 0.400844 |
xth | TDE1734 | exodeoxyribonuclease III | chromosome | CDS | 1788753 | 771 | + | 0.426719 |