SGB - The Spirochetes Genome Browser - Gene list

Title

+ Borrelia afzelii, PKo

+ Borrelia burgdorferi ZS7, ZS7

+ Borrelia burgdorferi, B31

+ Borrelia duttonii Ly, Ly

+ Borrelia garinii High passage (300), PBi

+ Borrelia garinii, PBi

+ Borrelia hermsii DAH, DAH

+ Borrelia recurrentis A1, A1

+ Borrelia turicatae 91E135, 91E135

+ Leptospira biflexa serovar Patoc strain Patoc 1 (Ames), Patoc 1 (Ames)

+ Leptospira biflexa serovar Patoc strain Patoc 1 (Paris), Patoc 1 (Paris)

+ Leptospira borgpetersenii serovar Hardjo-bovis JB197, JB197

+ Leptospira borgpetersenii serovar Hardjo-bovis L550, L550

+ Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130

+ Leptospira interrogans serovar lai str. 56601

+ Treponema denticola ATCC 35405

+ Treponema pallidum

+ Treponema pallidum subsp. pallidum SS14, SS14

+ COG functional categories

+ (Clickable) linear whole genome views

+ Horizontal gene transfer (predicted by SIGI-HMM)

+ Sequence retrieval

+ Advanced search

+ Sequence similarity search

+ Best bidirectional hits (protein-based analysis)

+ Gene core sets (protein-based analysis)

+ Gene partnerships (DNA-based analysis)

+ Protein variations (protein-based analysis)

+ Synteny analysis (protein-based analysis)

+ Gene conservation (protein-based analysis)

+ Codon and amino acid usages (DNA- and protein-based analysis)

+ Alignments of whole reference and target genomic elements (DNA-based analysis)

Gene list

Applied filters:

COG category: Secondary metabolites biosynthesis, transport and catabolism
Organism: Borrelia afzelii, PKo

Number of genes found: 10

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Show UniProt / TrEMBL protein name		View in Fasta format (DNA)		View in Fasta format (Protein)

Borrelia afzelii, PKo

Name	Locus tag	Product / Description	Genomic element	Type	Begin	Length	Strand	GC-content
NA	BAPKO_0502	conserved hypothetical integral membrane protein	PKO-g-P-chrIn1v1.w1	CDS	496449	1365	+	0.279853
NA	BAPKO_0747	acyl carrier protein	PKO-g-P-chrIn1v1.w1	CDS	744245	243	+	0.320988
NA	BAPKO_0604	ABC transporter, ATP-binding protein	PKO-g-P-chrIn1v1.w1	CDS	589988	807	+	0.27881
NA	BAPKO_0799	ABC transporter, ATP-binding protein	PKO-g-P-chrIn1v1.w1	CDS	800608	930	-	0.260215
NA	BAPKO_0783	hypothetical protein	PKO-g-P-chrIn1v1.w1	CDS	785897	348	-	0.238506
NA	BAPKO_0869	hypothetical protein	PKO-g-P-chrIn1v1.w1	CDS	866179	948	+	0.278481
NA	BAPKO_0615	hypothetical protein	PKO-g-P-chrIn1v1.w1	CDS	604779	1347	+	0.270973
NA	BAPKO_0614	hypothetical protein	PKO-g-P-chrIn1v1.w1	CDS	603275	1350	+	0.284444
acrB	BAPKO_0142	acriflavine resistance protein	PKO-g-P-chrIn1v1.w1	CDS	138185	3213	-	0.298475
mtrC	BAPKO_0143	membrane fusion protein	PKO-g-P-chrIn1v1.w1	CDS	141416	954	-	0.31761