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2024-05-20 22:01:55

Gene list

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COG category: Transcription
Organism: Treponema denticola ATCC 35405

Number of genes found: 130

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Treponema denticola ATCC 35405
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA TDE1382 transcriptional regulator, ArsR familySubName: Full=Transcriptional regulator, ArsR family; chromosome CDS1422140 354 + 0.432203
NA TDE2684 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2724270 669 - 0.403587
NA TDE0091 RNA polymerase sigma-24 factor, putativeSubName: Full=RNA polymerase sigma-24 factor, putative; chromosome CDS109280 543 - 0.383057
NA TDE2412 acetyltransferase, GNAT familySubName: Full=Acetyltransferase, GNAT family; chromosome CDS2439885 468 - 0.314103
NA TDE1115 DNA-binding protein, putativeSubName: Full=DNA-binding protein, putative; chromosome CDS1149128 309 - 0.391586
NA TDE2404 RNA polymerase sigma-54 factor, putativeSubName: Full=RNA polymerase sigma-54 factor, putative; chromosome CDS2429403 1392 - 0.397988
NA TDE2413 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2440413 666 - 0.342342
NA TDE0332 transcriptional regulator, TetR familySubName: Full=Transcriptional regulator, TetR family; chromosome CDS371080 627 + 0.333333
NA TDE1579 fibronectin/fibrinogen-binding protein, internal deletionSubName: Full=Fibronectin/fibrinogen-binding protein, internal deletion; chromosome CDS1626164 1416 - 0.35452
NA TDE0606 ParB family proteinSubName: Full=ParB family protein; chromosome CDS643329 894 - 0.395973
NA TDE2487 acetyltransferase, GNAT familySubName: Full=Acetyltransferase, GNAT family; chromosome CDS2509947 507 + 0.360947
NA TDE1365 transcriptional regulator, TetR familySubName: Full=Transcriptional regulator, TetR family; chromosome CDS1407895 579 + 0.295337
NA TDE1170 DNA-binding proteinSubName: Full=DNA-binding protein; chromosome CDS1199940 363 + 0.333333
NA TDE2650 transcriptional regulator, putativeSubName: Full=Transcriptional regulator, putative; chromosome CDS2688756 366 - 0.352459
NA TDE1601 transcriptional regulator, TetR familySubName: Full=Transcriptional regulator, TetR family; chromosome CDS1652479 648 - 0.353395
NA TDE2079 sigma-54 dependent transcriptional regulator, putativeSubName: Full=Sigma-54 dependent transcriptional regulator, putative; chromosome CDS2107608 1518 - 0.399209
NA TDE0079 DNA-binding proteinSubName: Full=DNA-binding protein; chromosome CDS90185 576 - 0.354167
NA TDE1690 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1746673 618 - 0.357605
NA TDE1812 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1847670 276 - 0.268116
NA TDE1746 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1799564 1242 - 0.39694
NA TDE2367 transcriptional regulator, putativeSubName: Full=Transcriptional regulator, putative; chromosome CDS2401220 645 + 0.324031
NA TDE1664 conserved domain proteinSubName: Full=Conserved domain protein; chromosome CDS1718002 1041 + 0.402498
NA TDE1900 conserved domain proteinSubName: Full=Conserved domain protein; chromosome CDS1921264 255 + 0.364706
NA TDE0344 transcriptional regulator, AbrB familySubName: Full=Transcriptional regulator, AbrB family; chromosome CDS385457 222 - 0.387387
NA TDE2109 ATP-dependent RNA helicase, DEAD/DEAH box familySubName: Full=ATP-dependent RNA helicase, DEAD/DEAH box family; chromosome CDS2133665 1713 - 0.446001
NA TDE0246 transcriptional regulator, TetR familySubName: Full=Transcriptional regulator, TetR family; chromosome CDS281186 570 - 0.364912
NA TDE0556 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS591628 555 - 0.4
NA TDE0630 sigma factor regulatory protein, putativeSubName: Full=Sigma factor regulatory protein, putative; chromosome CDS663980 1452 + 0.360882
NA TDE0542 acetyltransferase, GNAT familySubName: Full=Acetyltransferase, GNAT family; chromosome CDS582720 483 + 0.372671
NA TDE0339 transcriptional regulator, TetR familySubName: Full=Transcriptional regulator, TetR family; chromosome CDS378011 618 + 0.444984
NA TDE0149 DNA-binding response regulatorSubName: Full=DNA-binding response regulator; chromosome CDS169961 606 + 0.334983
NA TDE1035 transcriptional regulator, PadR familySubName: Full=Transcriptional regulator, PadR family; chromosome CDS1063594 327 + 0.406728
NA TDE1162 ParB-like nuclease domain proteinSubName: Full=ParB-like nuclease domain protein; chromosome CDS1196146 1629 - 0.332719
NA TDE0814 transcriptional regulator, putativeSubName: Full=Transcriptional regulator, putative; chromosome CDS835799 171 - 0.362573
NA TDE2581 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2610922 771 + 0.246433
NA TDE1114 transcriptional regulator, TetR familySubName: Full=Transcriptional regulator, TetR family; chromosome CDS1148324 672 - 0.452381
NA TDE0874 transcriptional regulator, putativeSubName: Full=Transcriptional regulator, putative; chromosome CDS897079 516 + 0.459302
NA TDE2420 DNA-directed RNA polymerase, beta' subunit, putativeRecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta; chromosome CDS2445050 4275 - 0.448187
NA TDE0441 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS496466 270 - 0.248148
NA TDE0222 acetyltransferase, GNAT familySubName: Full=Acetyltransferase, GNAT family; chromosome CDS254786 525 - 0.28
NA TDE0817 histidine kinase-related ATPase, putativeSubName: Full=Histidine kinase-related ATPase, putative; chromosome CDS838940 1080 + 0.330556
NA TDE0114 iron-dependent transcriptional regulatorSubName: Full=Iron-dependent transcriptional regulator; chromosome CDS133671 420 - 0.37381
NA TDE1858 transcriptional regulator, PadR familySubName: Full=Transcriptional regulator, PadR family; chromosome CDS1884772 315 + 0.412698
NA TDE0660 transcriptional regulator, putativeSubName: Full=Transcriptional regulator, putative; chromosome CDS696369 906 - 0.40287
NA TDE1222 iron-dependent transcriptional regulatorSubName: Full=Iron-dependent transcriptional regulator; chromosome CDS1256131 669 - 0.300448
NA TDE0675 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS714134 858 + 0.40676
NA TDE0895 transcriptional regulator, AraC familySubName: Full=Transcriptional regulator, AraC family; chromosome CDS911317 948 - 0.380802
NA TDE0989 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1017272 237 + 0.350211
NA TDE2115 HAMP domain proteinSubName: Full=HAMP domain protein; chromosome CDS2140270 4581 - 0.358
NA TDE0801 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS824015 435 - 0.335632
NA TDE0476 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS532288 717 - 0.44212
NA TDE0400 transcriptional regulator, LysR familySubName: Full=Transcriptional regulator, LysR family; chromosome CDS450973 921 - 0.37025
NA TDE0168 transcriptional regulator, GntR familySubName: Full=Transcriptional regulator, GntR family; chromosome CDS196757 402 - 0.400498
NA TDE0655 response regulatorSubName: Full=Response regulator; chromosome CDS691061 699 + 0.353362
NA TDE0133 transcriptional regulator, GntR familySubName: Full=Transcriptional regulator, GntR family; chromosome CDS152513 750 + 0.376
NA TDE2592 DbpA RNA binding domain proteinSubName: Full=DbpA RNA binding domain protein; chromosome CDS2627166 627 + 0.374801
NA TDE0496 DNA-binding protein, putativeSubName: Full=DNA-binding protein, putative; chromosome CDS551061 219 - 0.456621
NA TDE2005 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2023916 555 + 0.389189
NA TDE0348 transcriptional regulator, TetR familySubName: Full=Transcriptional regulator, TetR family; chromosome CDS390597 597 + 0.346734
NA TDE1097 acetyltransferase, GNAT familySubName: Full=Acetyltransferase, GNAT family; chromosome CDS1132002 855 - 0.291228
NA TDE1789 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1827428 276 - 0.275362
NA TDE2703 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2747695 786 - 0.366412
NA TDE2486 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2509377 555 + 0.259459
NA TDE0090 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS108634 663 - 0.348416
NA TDE0056 DNA-directed RNA polymerase, omega subunit, putativeSubName: Full=DNA-directed RNA polymerase, omega subunit, putative; chromosome CDS65846 207 + 0.400966
NA TDE1670 transcriptional regulator, MarR familySubName: Full=Transcriptional regulator, MarR family; chromosome CDS1724003 549 - 0.291439
NA TDE2501 response regulatorSubName: Full=Response regulator; chromosome CDS2524913 975 + 0.36
NA TDE2509 transcriptional regulator, AraC familySubName: Full=Transcriptional regulator, AraC family; chromosome CDS2533328 885 + 0.263277
NA TDE0608 DNA-binding protein, putativeSubName: Full=DNA-binding protein, putative; chromosome CDS645084 174 - 0.373563
NA TDE0070 RNA polymerase sigma-70 factor, region 2 familyRecName: Full=RNA polymerase sigma factor; chromosome CDS77853 828 + 0.349034
NA TDE0127 DNA-binding proteinSubName: Full=DNA-binding protein; chromosome CDS145890 315 + 0.326984
NA TDE0006 Snf2 family proteinSubName: Full=Snf2 family protein; chromosome CDS6200 3585 - 0.407252
NA TDE1953 transcriptional regulator, TetR familySubName: Full=Transcriptional regulator, TetR family; chromosome CDS1969120 642 - 0.394081
NA TDE0259 transcriptional regulator, MarR familySubName: Full=Transcriptional regulator, MarR family; chromosome CDS293397 453 + 0.377483
NA TDE2474 acetyltransferase, GNAT familySubName: Full=Acetyltransferase, GNAT family; chromosome CDS2496692 495 - 0.391919
NA TDE2320 RNA polymerase sigma-24 factor, putativeSubName: Full=RNA polymerase sigma-24 factor, putative; chromosome CDS2356400 642 - 0.380062
NA TDE2627 transcriptional regulator, TetR familySubName: Full=Transcriptional regulator, TetR family; chromosome CDS2668622 609 - 0.449918
NA TDE1099 acetyltransferase, GNAT familySubName: Full=Acetyltransferase, GNAT family; chromosome CDS1133826 516 - 0.271318
NA TDE0037 transcriptional regulator, AbrB familySubName: Full=Transcriptional regulator, AbrB family; chromosome CDS42641 249 - 0.345382
NA TDE1497 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1543348 417 + 0.352518
NA TDE1371 RNB-like family proteinSubName: Full=RNB-like family protein; chromosome CDS1413388 1872 - 0.40812
NA TDE1990 ATP-dependent helicase, DinG familySubName: Full=ATP-dependent helicase, DinG family; chromosome CDS2006457 2130 - 0.399531
NA TDE0820 transcriptional regulator, TetR familySubName: Full=Transcriptional regulator, TetR family; chromosome CDS843804 660 - 0.404545
NA TDE1123 sigma factor regulatory protein, putativeSubName: Full=Sigma factor regulatory protein, putative; chromosome CDS1153827 1686 - 0.365362
NA TDE1647 DNA-binding proteinSubName: Full=DNA-binding protein; chromosome CDS1696245 348 - 0.336207
NA TDE1330 conserved hypothetical protein TIGR00244RecName: Full=Transcriptional repressor NrdR; chromosome CDS1365519 456 + 0.383772
NA TDE1346 RNA polymerase sigma-70 factor family proteinRecName: Full=RNA polymerase sigma factor RpoD; AltName: Full=Sigma-70; chromosome CDS1385359 1860 + 0.394624
NA TDE1101 acetyltransferase, GNAT familySubName: Full=Acetyltransferase, GNAT family; chromosome CDS1134753 480 - 0.297917
NA TDE0878 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS899792 198 + 0.318182
NA TDE0876 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS898429 186 - 0.268817
NA TDE2309 sigma-54 dependent transcriptional regulator, putativeSubName: Full=Sigma-54 dependent transcriptional regulator, putative; chromosome CDS2346648 1542 - 0.457847
NA TDE0808 acetyltransferase, GNAT familySubName: Full=Acetyltransferase, GNAT family; chromosome CDS829270 471 - 0.33758
NA TDE0549 TfoX N-terminal domain family proteinSubName: Full=TfoX N-terminal domain family protein; chromosome CDS587087 321 - 0.370717
NA TDE1107 N utilization substance protein A, putativeSubName: Full=N utilization substance protein A, putative; chromosome CDS1140980 1488 - 0.395833
NA TDE2721 helicase domain proteinSubName: Full=Helicase domain protein; chromosome CDS2777923 1773 - 0.455161
NA TDE0891 transcriptional regulator, putativeSubName: Full=Transcriptional regulator, putative; chromosome CDS907732 921 + 0.365907
NA TDE1719 transcriptional regulator, MarR familySubName: Full=Transcriptional regulator, MarR family; chromosome CDS1774169 438 + 0.429224
NA TDE0191 acetyltransferase, GNAT familySubName: Full=Acetyltransferase, GNAT family; chromosome CDS227468 429 - 0.358974
NA TDE0393 transcriptional regulator, TetR familySubName: Full=Transcriptional regulator, TetR family; chromosome CDS443272 648 - 0.302469
NA TDE1305 DNA-binding proteinSubName: Full=DNA-binding protein; chromosome CDS1340240 219 + 0.39726
NA TDE2445 DNA-binding proteinSubName: Full=DNA-binding protein; chromosome CDS2474422 306 + 0.297386
NA TDE2659 GAF domain/HD domain proteinSubName: Full=GAF domain/HD domain protein; chromosome CDS2695990 1254 + 0.395534
NA TDE1606 transcriptional regulator, TetR familySubName: Full=Transcriptional regulator, TetR family; chromosome CDS1656271 678 - 0.371681
NA TDE2778 PspC domain proteinSubName: Full=PspC domain protein; chromosome CDS2829461 234 - 0.384615
NA TDE2277 transcriptional regulator, Sir2 familyRecName: Full=NAD-dependent protein deacetylase; EC=3.5.1.-; AltName: Full=Regulatory protein SIR2 homolog; chromosome CDS2312820 756 + 0.412698
NA TDE2187 ParB-like nuclease domain proteinSubName: Full=ParB-like nuclease domain protein; chromosome CDS2221237 402 - 0.39801
NA TDE1169 phage DNA-binding protein, excisionase familySubName: Full=Phage DNA-binding protein, excisionase family; chromosome CDS1199569 246 - 0.418699
NA TDE0676 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS715000 420 + 0.395238
NA TDE0440 DNA-binding proteinSubName: Full=DNA-binding protein; chromosome CDS496091 276 + 0.347826
NA TDE2324 DNA-binding response regulatorSubName: Full=DNA-binding response regulator; chromosome CDS2359328 654 + 0.376147
NA TDE0713 transcription antitermination protein, NusG familySubName: Full=Transcription antitermination protein, NusG family; chromosome CDS747249 528 + 0.316288
NA TDE1486 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1530439 315 + 0.396825
NA TDE0703 transcriptional regulator, AbrB familySubName: Full=Transcriptional regulator, AbrB family; chromosome CDS738056 225 - 0.395556
NA TDE1495 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1539686 621 - 0.293076
NA TDE0937 RNA polymerase sigma-70 factor family proteinRecName: Full=RNA polymerase sigma factor; chromosome CDS960091 861 + 0.379791
NA TDE0033 DNA-binding response regulatorSubName: Full=DNA-binding response regulator; chromosome CDS40067 720 - 0.348611
NA TDE2290 transcriptional regulator, putativeSubName: Full=Transcriptional regulator, putative; chromosome CDS2327617 627 + 0.422648
NA TDE1784 transcriptional activator, AraC familySubName: Full=Transcriptional activator, AraC family; chromosome CDS1823671 843 - 0.405694
NA TDE0082 transcriptional regulator, MerR familySubName: Full=Transcriptional regulator, MerR family; chromosome CDS94024 318 - 0.377358
NA TDE1100 acetyltransferase, GNAT familySubName: Full=Acetyltransferase, GNAT family; chromosome CDS1134358 405 - 0.276543
fliA TDE2683 RNA polymerase sigma-27 factorSubName: Full=RNA polymerase sigma-27 factor; chromosome CDS2723457 789 - 0.373891
hypB TDE2165 hydrogenase accessory protein HypBSubName: Full=Hydrogenase accessory protein HypB; chromosome CDS2197143 663 - 0.399698
mfd TDE1287 transcription-repair coupling factorRecName: Full=Transcription-repair-coupling factor; Short=TRCF; EC=3.6.4.-; chromosome CDS1322878 3468 + 0.400519
nusB TDE1657 N utilization substance protein BRecName: Full=N utilization substance protein B homolog; Short=Protein NusB; chromosome CDS1707320 411 - 0.379562
nusG TDE2426 transcription antitermination protein NusGRecName: Full=Transcription termination/antitermination protein NusG; chromosome CDS2455332 558 - 0.401434
recG TDE2579 ATP-dependent DNA helicase RecGSubName: Full=ATP-dependent DNA helicase RecG; EC=3.6.1.-; chromosome CDS2603378 2037 - 0.459499
rho TDE1503 transcription termination factor RhoRecName: Full=Transcription termination factor Rho; EC=3.6.4.-; AltName: Full=ATP-dependent helicase Rho; chromosome CDS1551807 1647 + 0.403157
rnc TDE1027 ribonuclease IIIRecName: Full=Ribonuclease 3; EC=3.1.26.3; AltName: Full=Ribonuclease III; Short=RNase III; chromosome CDS1057702 741 + 0.421053
rpoA TDE0791 DNA-directed RNA polymerase, alpha subunitRecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP subunit alpha; EC=2.7.7.6; AltName: Full=RNA polymerase subunit alpha; AltName: Full=Transcriptase subunit alpha; chromosome CDS817482 1056 + 0.392992
rpoB TDE2421 DNA-directed RNA polymerase, beta subunitRecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta; chromosome CDS2449349 3504 - 0.432934