SGB - The Spirochetes Genome Browser - Gene list

Title

+ Borrelia afzelii, PKo

+ Borrelia burgdorferi ZS7, ZS7

+ Borrelia burgdorferi, B31

+ Borrelia duttonii Ly, Ly

+ Borrelia garinii High passage (300), PBi

+ Borrelia garinii, PBi

+ Borrelia hermsii DAH, DAH

+ Borrelia recurrentis A1, A1

+ Borrelia turicatae 91E135, 91E135

+ Leptospira biflexa serovar Patoc strain Patoc 1 (Ames), Patoc 1 (Ames)

+ Leptospira biflexa serovar Patoc strain Patoc 1 (Paris), Patoc 1 (Paris)

+ Leptospira borgpetersenii serovar Hardjo-bovis JB197, JB197

+ Leptospira borgpetersenii serovar Hardjo-bovis L550, L550

+ Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130

+ Leptospira interrogans serovar lai str. 56601

+ Treponema denticola ATCC 35405

+ Treponema pallidum

+ Treponema pallidum subsp. pallidum SS14, SS14

+ COG functional categories

+ (Clickable) linear whole genome views

+ Horizontal gene transfer (predicted by SIGI-HMM)

+ Sequence retrieval

+ Advanced search

+ Sequence similarity search

+ Best bidirectional hits (protein-based analysis)

+ Gene core sets (protein-based analysis)

+ Gene partnerships (DNA-based analysis)

+ Protein variations (protein-based analysis)

+ Synteny analysis (protein-based analysis)

+ Gene conservation (protein-based analysis)

+ Codon and amino acid usages (DNA- and protein-based analysis)

+ Alignments of whole reference and target genomic elements (DNA-based analysis)

Gene list

Applied filters:

COG category: Unclassified
Genomic element: pl41

Number of genes found: 19

Free access


Show UniProt / TrEMBL protein name		View in Fasta format (DNA)		View in Fasta format (Protein)

Borrelia duttonii Ly, Ly

Name	Locus tag	Product / Description	Genomic element	Type	Begin	Length	Strand	GC-content
NA	BDU_4010	family 115-like protein	pl41	CDS	12113	552	-	0.282609
NA	BDU_4038	family 88-like protein	pl41	CDS	40752	345	-	0.211594
NA	BDU_4001	antigen P35-like protein	pl41	CDS	1	808	-	0.258663
NA	BDU_4020	MlpL-like protein	pl41	CDS	20486	435	-	0.229885
NA	BDU_4011	family 113-like protein, lipoprotein	pl41	CDS	12915	567	+	0.253968
NA	BDU_4029	family 115-like protein	pl41	CDS	29075	540	+	0.285185
NA	BDU_4028	ORFk-like protein, lipoprotein	pl41	CDS	28228	693	-	0.278499
NA	BDU_4022	family 115-like protein	pl41	CDS	22013	540	+	0.287037
NA	BDU_4021	ORFk-like protein	pl41	CDS	21162	699	-	0.257511
pf49	BDU_4014	PF49 plasmid partition protein	pl41	CDS	15167	582	-	0.228522
ppap1	BDU_4016	plasmid partitioning associated protein-1	pl41	CDS	16551	561	-	0.231729
ppap2	BDU_4017	plasmid partionning associated protein 2	pl41	CDS	17121	1149	-	0.262837
vlp-b	BDU_4034	vlp protein, beta subfamily	pl41	CDS	34393	1059	+	0.380548
vlp-c_1	BDU_4026	vlp protein, gamma subfamily	pl41	CDS	25946	1125	+	0.384889
vlp-c_2	BDU_4032	vlp protein, gamma subfamily	pl41	CDS	31887	1107	+	0.390244
vlp-d_2	BDU_4003	vlp protein, delta subfamily	pl41	CDS	3650	993	-	0.365559
vlp-d_3	BDU_4004	vlp protein, delta subfamily	pl41	CDS	4918	1044	-	0.369732
vlp-d_4	BDU_4033	vlp protein, delta subfamily	pl41	CDS	33180	1029	+	0.38484
vlp_2	BDU_4036	vlp protein	pl41	CDS	37619	978	+	0.346626