SGB - The Spirochetes Genome Browser - Gene list

Title

+ Borrelia afzelii, PKo

+ Borrelia burgdorferi ZS7, ZS7

+ Borrelia burgdorferi, B31

+ Borrelia duttonii Ly, Ly

+ Borrelia garinii High passage (300), PBi

+ Borrelia garinii, PBi

+ Borrelia hermsii DAH, DAH

+ Borrelia recurrentis A1, A1

+ Borrelia turicatae 91E135, 91E135

+ Leptospira biflexa serovar Patoc strain Patoc 1 (Ames), Patoc 1 (Ames)

+ Leptospira biflexa serovar Patoc strain Patoc 1 (Paris), Patoc 1 (Paris)

+ Leptospira borgpetersenii serovar Hardjo-bovis JB197, JB197

+ Leptospira borgpetersenii serovar Hardjo-bovis L550, L550

+ Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130

+ Leptospira interrogans serovar lai str. 56601

+ Treponema denticola ATCC 35405

+ Treponema pallidum

+ Treponema pallidum subsp. pallidum SS14, SS14

+ COG functional categories

+ (Clickable) linear whole genome views

+ Horizontal gene transfer (predicted by SIGI-HMM)

+ Sequence retrieval

+ Advanced search

+ Sequence similarity search

+ Best bidirectional hits (protein-based analysis)

+ Gene core sets (protein-based analysis)

+ Gene partnerships (DNA-based analysis)

+ Protein variations (protein-based analysis)

+ Synteny analysis (protein-based analysis)

+ Gene conservation (protein-based analysis)

+ Codon and amino acid usages (DNA- and protein-based analysis)

+ Alignments of whole reference and target genomic elements (DNA-based analysis)

Gene list

Applied filters:

COG category: Amino acid transport and metabolism
Genomic element: chromosome II

Number of genes found: 19

Free access


Show UniProt / TrEMBL protein name		View in Fasta format (DNA)		View in Fasta format (Protein)

Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130

Name	Locus tag	Product / Description	Genomic element	Type	Begin	Length	Strand	GC-content
NA	LIC20149	multidrug-efflux transporter	chromosome II	CDS	180354	1209	+	0.368073
NA	LIC20163	conserved hypothetical protein	chromosome II	CDS	197539	1389	+	0.327574
NA	LIC20210	transport system kinase	chromosome II	CDS	270034	1056	+	0.397727
NA	LIC20063	conserved hypothetical protein	chromosome II	CDS	68263	1932	+	0.311594
NA	LIC20188	sodium:solute symporter family	chromosome II	CDS	238678	1389	-	0.383009
argB	LIC20090	acetylglutamate kinase	chromosome II	CDS	104206	885	-	0.38983
argK	LIC20057	LAO/AO transport system kinase	chromosome II	CDS	59901	969	-	0.408669
aroB	LIC20068	3-dehydroquinate synthase	chromosome II	CDS	73911	1086	+	0.371087
aroK	LIC20099	shikimate kinase	chromosome II	CDS	115948	540	-	0.355556
asd	LIC20266	aspartate beta-semialdehyde dehydrogenase	chromosome II	CDS	335135	1050	-	0.398095
cbiP	LIC20121	histidinol-phosphate aminotransferase and cobyric acid synthase	chromosome II	CDS	143645	2592	-	0.331404
csdB	LIC20204	cysteine desulfurase	chromosome II	CDS	262066	1152	-	0.37934
gltB	LIC20220	glutamate synthase	chromosome II	CDS	280864	1653	+	0.414398
hisE	LIC20062	phosphoribosyl-ATP pyrophosphatase	chromosome II	CDS	67981	279	+	0.383513
kamA	LIC20230	L-lysine 2, 3-aminomutase	chromosome II	CDS	292771	1098	+	0.3898
metF	LIC20002	5,10 methylene tetrahydrofolate reductase	chromosome II	CDS	2491	933	+	0.381565
metH	LIC20085	methionine synthase	chromosome II	CDS	95220	3744	+	0.405182
speD	LIC20239	S-adenosylmethionine decarboxylase	chromosome II	CDS	302749	387	-	0.434109
speH	LIC20238	S-adenosylmethionine decarboxylase like protein	chromosome II	CDS	301783	867	-	0.400231