SGB - The Spirochetes Genome Browser - Gene list

Title

+ Borrelia afzelii, PKo

+ Borrelia burgdorferi ZS7, ZS7

+ Borrelia burgdorferi, B31

+ Borrelia duttonii Ly, Ly

+ Borrelia garinii High passage (300), PBi

+ Borrelia garinii, PBi

+ Borrelia hermsii DAH, DAH

+ Borrelia recurrentis A1, A1

+ Borrelia turicatae 91E135, 91E135

+ Leptospira biflexa serovar Patoc strain Patoc 1 (Ames), Patoc 1 (Ames)

+ Leptospira biflexa serovar Patoc strain Patoc 1 (Paris), Patoc 1 (Paris)

+ Leptospira borgpetersenii serovar Hardjo-bovis JB197, JB197

+ Leptospira borgpetersenii serovar Hardjo-bovis L550, L550

+ Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130

+ Leptospira interrogans serovar lai str. 56601

+ Treponema denticola ATCC 35405

+ Treponema pallidum

+ Treponema pallidum subsp. pallidum SS14, SS14

+ COG functional categories

+ (Clickable) linear whole genome views

+ Horizontal gene transfer (predicted by SIGI-HMM)

+ Sequence retrieval

+ Advanced search

+ Sequence similarity search

+ Best bidirectional hits (protein-based analysis)

+ Gene core sets (protein-based analysis)

+ Gene partnerships (DNA-based analysis)

+ Protein variations (protein-based analysis)

+ Synteny analysis (protein-based analysis)

+ Gene conservation (protein-based analysis)

+ Codon and amino acid usages (DNA- and protein-based analysis)

+ Alignments of whole reference and target genomic elements (DNA-based analysis)

Gene list

Applied filters:

COG category: Carbohydrate transport and metabolism
Genomic element: chromosome II

Number of genes found: 13

Free access


Show UniProt / TrEMBL protein name		View in Fasta format (DNA)		View in Fasta format (Protein)

Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130

Name	Locus tag	Product / Description	Genomic element	Type	Begin	Length	Strand	GC-content
NA	LIC20163	conserved hypothetical protein	chromosome II	CDS	197539	1389	+	0.327574
NA	LIC20226	aldolase class II	chromosome II	CDS	288068	750	-	0.401333
NA	LIC20191	conserved hypothetical protein	chromosome II	CDS	243091	1965	-	0.378117
NA	LIC20063	conserved hypothetical protein	chromosome II	CDS	68263	1932	+	0.311594
NA	LIC20049	conserved hypothetical protein	chromosome II	CDS	50125	1020	-	0.357843
NA	LIC20149	multidrug-efflux transporter	chromosome II	CDS	180354	1209	+	0.368073
NA	LIC20077	polysaccharide deacetylase	chromosome II	CDS	86696	1431	-	0.350105
capD	LIC20138	capsular polysaccharide biosynthesis protein	chromosome II	CDS	163969	1890	+	0.385714
galU	LIC20199	UTP-glucose-1-phosphate uridyltransferase	chromosome II	CDS	254973	1419	-	0.384073
nagD	LIC20079	haloacid dehalogenase-like protein	chromosome II	CDS	89587	810	+	0.346914
pfp	LIC20088	pyrophosphate-fructose-6-phosphate 1-phosphotransferase	chromosome II	CDS	100789	1296	+	0.392747
pgmA	LIC20119	phosphoglycerate mutase	chromosome II	CDS	142054	624	-	0.302885
pykF	LIC20264	pyruvate kinase	chromosome II	CDS	331662	1461	-	0.4141