SGB - The Spirochetes Genome Browser - Gene list

Title

+ Borrelia afzelii, PKo

+ Borrelia burgdorferi ZS7, ZS7

+ Borrelia burgdorferi, B31

+ Borrelia duttonii Ly, Ly

+ Borrelia garinii High passage (300), PBi

+ Borrelia garinii, PBi

+ Borrelia hermsii DAH, DAH

+ Borrelia recurrentis A1, A1

+ Borrelia turicatae 91E135, 91E135

+ Leptospira biflexa serovar Patoc strain Patoc 1 (Ames), Patoc 1 (Ames)

+ Leptospira biflexa serovar Patoc strain Patoc 1 (Paris), Patoc 1 (Paris)

+ Leptospira borgpetersenii serovar Hardjo-bovis JB197, JB197

+ Leptospira borgpetersenii serovar Hardjo-bovis L550, L550

+ Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130

+ Leptospira interrogans serovar lai str. 56601

+ Treponema denticola ATCC 35405

+ Treponema pallidum

+ Treponema pallidum subsp. pallidum SS14, SS14

+ COG functional categories

+ (Clickable) linear whole genome views

+ Horizontal gene transfer (predicted by SIGI-HMM)

+ Sequence retrieval

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+ Sequence similarity search

+ Best bidirectional hits (protein-based analysis)

+ Gene core sets (protein-based analysis)

+ Gene partnerships (DNA-based analysis)

+ Protein variations (protein-based analysis)

+ Synteny analysis (protein-based analysis)

+ Gene conservation (protein-based analysis)

+ Codon and amino acid usages (DNA- and protein-based analysis)

+ Alignments of whole reference and target genomic elements (DNA-based analysis)

Gene list

Applied filters:

COG category: Lipid transport and metabolism
Organism: Treponema pallidum subsp. pallidum SS14, SS14

Number of genes found: 19

Free access


Show UniProt / TrEMBL protein name		View in Fasta format (DNA)		View in Fasta format (Protein)

Treponema pallidum subsp. pallidum SS14, SS14

Name	Locus tag	Product / Description	Genomic element	Type	Begin	Length	Strand	GC-content
NA	TPASS_0671	possible sn-1,2-diacylglycerol cholinephosphotransferase	chromosome	CDS	736914	1035	-	0.499517
NA	TPASS_0695	possible phosphoribosylglycinamide formyltransferase	chromosome	CDS	763908	1794	+	0.598662
NA	TPASS_0371	hypothetical protein	chromosome	CDS	395959	876	+	0.58105
NA	TPASS_0918	hypothetical integral membrane protein	chromosome	CDS	996819	774	+	0.614987
NA	TPASS_0145	long-chain-fatty-acid--CoA ligase	chromosome	CDS	167087	1971	+	0.538305
NA	TPASS_0551	phosphatase	chromosome	CDS	598507	1089	-	0.571166
NA	TPASS_0935	possibleN-acetylphosphinothricin-tripetide-deacetylase	chromosome	CDS	1017917	939	-	0.503727
NA	TPASS_0730	hypothetical protein	chromosome	CDS	797005	1098	+	0.553734
NA	TPASS_0361	possible lysophosphatidic acid acyltransferase	chromosome	CDS	384106	849	-	0.575972
NA	TPASS_0603	hypothetical protein	chromosome	CDS	656361	687	-	0.52984
NA	TPASS_0512	hypothetical protein	chromosome	CDS	549056	1248	+	0.576923
acpP	TPASS_0808	acyl carrier protein	chromosome	CDS	879080	237	+	0.481013
acpS	TPASS_0828	holo-acyl-carrier protein synthase	chromosome	CDS	896820	378	+	0.492063
cdsA	TPASS_0602	phosphatidate cytidylyltransferase	chromosome	CDS	655501	864	-	0.484954
dxr	TPASS_0601	1-deoxy-D-xylulose 5-phosphate reductoisomerase	chromosome	CDS	654374	1152	-	0.525174
dxs	TPASS_0824	deoxyxylulose-5-phosphate synthase	chromosome	CDS	893001	1893	+	0.560486
gcpE	TPASS_0446	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase	chromosome	CDS	473747	1215	+	0.520165
lytB	TPASS_0547	penicillin tolerance protein	chromosome	CDS	591843	1131	-	0.643678
pgsA	TPASS_0256	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	chromosome	CDS	268626	651	+	0.477727