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2024-05-10 17:34:21

Gene list

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COG category: Translation, ribosomal structure and biogenesis
Organism: Leptospira biflexa serovar Patoc strain Patoc 1 (Paris), Patoc 1 (Paris)

Number of genes found: 149

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Leptospira biflexa serovar Patoc strain Patoc 1 (Paris), Patoc 1 (Paris)
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA LEPBI_I1815 Putative tRNA-i(6)A37 modification enzyme MiaBchromosome I CDS1896352 1377 - 0.378359
NA LEPBI_I1967 Putative elongation factor Gchromosome I CDS2043288 1932 - 0.445652
NA LEPBI_I1946 50S ribosomal protein L15chromosome I CDS2032871 534 - 0.449438
NA LEPBI_I0353 Conserved hypothetical proteinchromosome I CDS352674 357 + 0.406162
NA LEPBI_I0172 Putative ribonuclease D (RNase D)chromosome I CDS166847 1221 - 0.386568
NA LEPBI_I0082 Putative ribosomal RNA methyltransferase, putative hemolysine TlyA-like proteinchromosome I CDS82068 774 - 0.382429
NA LEPBI_I0075 Putative nucleotide-diphospho-sugar transferasechromosome I CDS75537 723 - 0.348548
NA LEPBI_p0051 Putative rRNA methylasep74 CDS61485 786 + 0.419847
NA LEPBI_I2347 Putative translation release factorchromosome I CDS2418214 333 - 0.45045
NA LEPBI_I2146 Putative sigma-54 modulation proteinchromosome I CDS2237133 288 + 0.368056
NA LEPBI_I2028 Putative methionyl-tRNA formyltransferasechromosome I CDS2110160 681 - 0.389134
NA LEPBI_I1850 Conserved hypothetical proteinchromosome I CDS1940336 465 + 0.447312
NA LEPBI_I2034 Putative N-acetyltransferasechromosome I CDS2115641 552 - 0.32971
NA LEPBI_I3460 Putative cytidine/adenosine deaminasechromosome I CDS3578955 441 + 0.385488
NA LEPBI_I2926 Putative 5-methylthioribose-1-phosphate isomerase (MTNA)chromosome I CDS3023620 1074 - 0.417132
NA LEPBI_I0017 Conserved hypothetical proteinchromosome I CDS16452 633 + 0.347551
NA LEPBI_I3458 Putative RNA methyltransferase, TrmA familychromosome I CDS3577088 1152 - 0.380208
NA LEPBI_I2136 ATP-dependent RNA helicasechromosome I CDS2228150 1590 - 0.433962
NA LEPBI_I1935 Putative histidyl-tRNA synthetasechromosome I CDS2022503 1047 - 0.369628
NA LEPBI_I0843 Putative tRNA/rRNA methyltransferase, TrmH (SpoU) familychromosome I CDS856054 468 + 0.452991
NA LEPBI_I2571 Conserved hypothetical proteinchromosome I CDS2658081 1290 - 0.389922
NA LEPBI_I2045 Putative tRNA guanosine-2'-O-methyltransferasechromosome I CDS2126139 858 - 0.404429
NA LEPBI_I2239 Conserved hypothetical proteinchromosome I CDS2317304 249 + 0.273092
NA LEPBI_I3150 Pseudouridine synthase (Uracil hydrolyase)chromosome I CDS3264085 939 + 0.460064
NA LEPBI_II0234 Putative lysyl-tRNA synthetasechromosome II CDS228951 972 - 0.415638
NA LEPBI_I1726 Putative tRNA/rRNA methyltransferase, trmH familychromosome I CDS1798670 702 + 0.388889
NA LEPBI_I1343 Putative ribosomal large subunit pseudouridine synthasechromosome I CDS1398489 963 + 0.387331
NA LEPBI_I2022 Putative acetyltransferasechromosome I CDS2104557 546 - 0.336996
NA LEPBI_I0091 Putative tRNA (uracil-5-)-methyltransferasechromosome I CDS91365 1200 - 0.4075
NA LEPBI_I1040 Putative rRNA methyltransferasechromosome I CDS1080462 834 - 0.413669
NA LEPBI_I1597 Conserved hypothetical protein; putative signal peptidechromosome I CDS1673774 834 - 0.351319
NA LEPBI_I1396 Putative MiaB-like tRNA modifying enzymechromosome I CDS1455588 1347 + 0.411284
NA LEPBI_I2744 Hypothetical proteinchromosome I CDS2835635 921 + 0.361564
NA LEPBI_I2850 Putative tRNA nucleotidyltransferasechromosome I CDS2939708 1293 + 0.335654
NA LEPBI_I0417 Hypothetical proteinchromosome I CDS412568 678 - 0.339233
NA LEPBI_I1463 Putative ribosomal subunit pseudouridine synthasechromosome I CDS1525402 744 + 0.376344
NA LEPBI_I1126 Putative dimethyladenosine transferasechromosome I CDS1173841 771 - 0.417639
NA LEPBI_I2413 Putative RNA methyltransferasechromosome I CDS2485759 1320 + 0.390152
NA LEPBI_I3396 Conserved hypothetical proteinchromosome I CDS3519057 381 - 0.354331
NA LEPBI_I1839 Putative translation factor SUA5chromosome I CDS1930618 957 - 0.426332
NA LEPBI_I2113 Putative RNA pseudouridine synthase (RNA-uridine isomerase; RNA pseudouridylate synthase)chromosome I CDS2207020 696 - 0.393678
alaS LEPBI_I1391 Alanyl-tRNA synthetase (Alanine--tRNA ligase; AlaRS)chromosome I CDS1447371 2760 + 0.407246
argS LEPBI_I2089 Arginyl-tRNA synthetase (Arginine--tRNA ligase; ArgRS)chromosome I CDS2183258 1785 - 0.366387
asnS LEPBI_I1722 Asparaginyl-tRNA synthetase (Asparagine--tRNA ligase; AsnRS)chromosome I CDS1793975 1305 - 0.445977
aspS LEPBI_I2095 Aspartyl-tRNA synthetase (Aspartate--tRNA ligase; AspRS)chromosome I CDS2189879 1806 - 0.430233
cysS LEPBI_I1725 Cysteinyl-tRNA synthetase (Cysteine--tRNA ligase)chromosome I CDS1797159 1458 + 0.355967
deaD LEPBI_II0208 ATP-dependent RNA helicase, DEAD-box family (DeaD)chromosome II CDS209193 1605 + 0.437383
def LEPBI_I1573 Peptide deformylase (PDF; Polypeptide deformylase)chromosome I CDS1644490 540 - 0.42037
efp LEPBI_II0201 Putative elongation factor Pchromosome II CDS203483 567 - 0.405644
fmt LEPBI_I1657 Methionyl-tRNA formyltransferasechromosome I CDS1733686 969 + 0.460268
frr LEPBI_I2614 Ribosome recycling factor (Ribosome releasing factor; RRF)chromosome I CDS2705196 552 - 0.393116
fusA LEPBI_I1153 Elongation factor G (EF-G)chromosome I CDS1199542 2121 - 0.451202
gatA LEPBI_I1730 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit Achromosome I CDS1802975 1467 - 0.371506
gatB LEPBI_I2941 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B (Asp/Glu-ADT subunit B)chromosome I CDS3039575 1464 - 0.394809
gatC LEPBI_I1731 Glutamyl-tRNA(Gln) amidotransferase subunit C 1 (Glu-ADT subunit C 1)chromosome I CDS1804438 285 - 0.305263
gltX LEPBI_I0677 Glutamyl-tRNA synthetase (Glutamate--tRNA ligase; GluRS)chromosome I CDS682296 1554 - 0.428571
glyQS LEPBI_I0890 Glycyl-tRNA synthetase (Glycine--tRNA ligase; GlyRS)chromosome I CDS910462 1485 - 0.426263
hemK LEPBI_I1148 Modification methylase HemKchromosome I CDS1194870 888 - 0.404279
hisS LEPBI_I3236 Histidyl-tRNA synthetase (Histidine--tRNA ligase; HisRS)chromosome I CDS3348738 1314 - 0.372146
ileS LEPBI_I2290 Isoleucyl-tRNA synthetase (Isoleucine--tRNA ligase; IleRS)chromosome I CDS2357420 2748 + 0.409389
infA LEPBI_I1943 Translation initiation factor IF-1chromosome I CDS2030689 159 - 0.427673
infB LEPBI_I1525 Translation initiation factor IF-2chromosome I CDS1589691 2754 + 0.479303
infC LEPBI_I2400 Translation initiation factor IF-3chromosome I CDS2468854 564 - 0.432624
leuS LEPBI_I0262 Leucyl-tRNA synthetasechromosome I CDS255488 2604 - 0.432028
lysS LEPBI_I1897 Lysyl-tRNA synthetase (Lysine--tRNA ligase; LysRS)chromosome I CDS1989515 1494 + 0.422356
mapA LEPBI_I0342 Methionine aminopeptidase (MAP; Peptidase M)chromosome I CDS342550 756 + 0.421958
mapB LEPBI_I2711 Methionine aminopeptidase (MAP; Peptidase M)chromosome I CDS2808152 756 + 0.453704
metG LEPBI_I3307 Methionyl-tRNA synthetase (Methionine--tRNA ligase)chromosome I CDS3419438 2046 - 0.391496
miaA LEPBI_I0478 tRNA delta(2)-isopentenylpyrophosphate transferasechromosome I CDS473441 891 + 0.43771
pcnB LEPBI_I1386 Poly(A) polymerase (PAP; Plasmid copy number protein)chromosome I CDS1442567 1494 + 0.401606
pheS LEPBI_I0510 Phenylalanyl-tRNA synthetase alpha chain (Phenylalanine--tRNA ligase alpha chain; PheRS)chromosome I CDS508461 1026 + 0.434698
pheT LEPBI_I0306 Phenylalanyl-tRNA synthetase beta chain (Phenylalanine--tRNA ligase beta chain; PheRS)chromosome I CDS301050 2400 - 0.389583
pnp LEPBI_I1529 Polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase; PNPase)chromosome I CDS1594201 2091 + 0.435677
prfA LEPBI_I3282 Peptide chain release factor 1chromosome I CDS3394384 1062 - 0.422787
prfB LEPBI_I0253 Peptide chain release factor 2chromosome I CDS243940 1128 + 0.387411
prfC LEPBI_I1806 Peptide chain release factor 3 (RF-3)chromosome I CDS1885791 1590 - 0.406289
prmA LEPBI_I1120 Ribosomal protein L11 methyltransferase (L11 Mtase)chromosome I CDS1168374 927 - 0.366775
proS LEPBI_I2609 Prolyl-tRNA synthetase (Proline--tRNA ligase; ProRS)chromosome I CDS2698866 1761 - 0.417944
pthA LEPBI_I1292 Peptidyl-tRNA hydrolase (PTH)chromosome I CDS1348505 567 + 0.430335
pthB LEPBI_I0234 Peptidyl-tRNA hydrolase (PTH)chromosome I CDS225880 564 - 0.406028
queA LEPBI_II0252 S-adenosylmethionine--tRNAribosyltransferase-isomerasechromosome II CDS241744 1041 - 0.398655
rbfA LEPBI_I1526 Ribosome-binding factor Achromosome I CDS1592455 450 + 0.408889
rfbA LEPBI_I0518 Glucose-1-phosphate thymidylyltransferasechromosome I CDS517165 1032 + 0.359496
rhlE LEPBI_I2827 ATP-dependent RNA helicase RhlEchromosome I CDS2919379 1416 - 0.410311
rimM LEPBI_I1662 Putative 16S rRNA processing protein RimMchromosome I CDS1736888 516 + 0.443798
rluD LEPBI_I0096 Pseudouridine synthase (Uracil hydrolyase)chromosome I CDS96911 714 - 0.368347
rnd LEPBI_I0773 Ribonuclease Dchromosome I CDS790667 639 + 0.380282
rplA LEPBI_I1975 50S ribosomal protein L1chromosome I CDS2055393 693 - 0.441558
rplB LEPBI_I1961 50S ribosomal protein L2chromosome I CDS2039289 837 - 0.434886
rplC LEPBI_I1964 50S ribosomal protein L3chromosome I CDS2041085 624 - 0.447115
rplD LEPBI_I1963 50S ribosomal protein L4chromosome I CDS2040438 636 - 0.421384
rplE LEPBI_I1952 50S ribosomal protein L5chromosome I CDS2035651 552 - 0.427536
rplF LEPBI_I1950 50S ribosomal protein L6chromosome I CDS2034485 540 - 0.45
rplI LEPBI_I2097 50S ribosomal protein L9chromosome I CDS2193062 447 - 0.409396
rplJ LEPBI_I1974 50S ribosomal protein L10chromosome I CDS2054847 534 - 0.432584
rplK LEPBI_I1976 50S ribosomal protein L11chromosome I CDS2056111 426 - 0.443662
rplL LEPBI_I1973 50S ribosomal protein L7/L12chromosome I CDS2054428 384 - 0.463542
rplM LEPBI_I1388 50S ribosomal protein L13chromosome I CDS1445202 453 + 0.437086
rplN LEPBI_I1954 50S ribosomal protein L14chromosome I CDS2036590 393 - 0.442748
rplP LEPBI_I1957 50S ribosomal protein L16chromosome I CDS2037521 414 - 0.439614
rplQ LEPBI_I1938 50S ribosomal subunit protein L17chromosome I CDS2027592 519 - 0.381503
rplR LEPBI_I1949 50S ribosomal protein L18chromosome I CDS2034110 369 - 0.441734
rplS LEPBI_I1664 50S ribosomal protein L19chromosome I CDS1738055 429 + 0.41958
rplT LEPBI_I2398 50S ribosomal protein L20chromosome I CDS2468288 354 - 0.420904
rplU LEPBI_I1773 50S ribosomal subunit protein L21chromosome I CDS1852894 309 + 0.414239
rplV LEPBI_I1959 50S ribosomal protein L22chromosome I CDS2038638 354 - 0.415254
rplW LEPBI_I1962 50S ribosomal protein L23chromosome I CDS2040128 306 - 0.398693
rplX LEPBI_I1953 50S ribosomal protein L24chromosome I CDS2036205 384 - 0.416667
rplY LEPBI_I0235 50S ribosomal protein L25chromosome I CDS226463 636 - 0.433962
rpmA LEPBI_I1775 50S ribosomal protein L27chromosome I CDS1853536 258 + 0.422481
rpmB LEPBI_I1020 50S ribosomal protein L28chromosome I CDS1064574 291 + 0.436426
rpmC LEPBI_I1956 50S ribosomal protein L29chromosome I CDS2037252 273 - 0.399267
rpmD LEPBI_I1947 50S ribosomal protein L30chromosome I CDS2033409 180 - 0.372222
rpmE LEPBI_I1033 50S ribosomal protein L31chromosome I CDS1075300 201 + 0.41791
rpmI LEPBI_I2399 50S ribosomal protein L35chromosome I CDS2468645 201 - 0.393035
rpsA LEPBI_I2595 30S ribosomal protein S1chromosome I CDS2681132 1701 - 0.423868
rpsA1 LEPBI_I0842 30S ribosomal protein S1chromosome I CDS854889 1158 + 0.379102
rpsB LEPBI_I2617 30S ribosomal protein S2chromosome I CDS2707069 903 - 0.398671
rpsC LEPBI_I1958 30S ribosomal protein S3chromosome I CDS2037957 678 - 0.414454
rpsD LEPBI_I1940 30S ribosomal protein S4chromosome I CDS2029115 633 - 0.396524
rpsE LEPBI_I1948 30S ribosomal protein S5chromosome I CDS2033603 507 - 0.435897
rpsF LEPBI_I2100 30S ribosomal protein S6chromosome I CDS2194310 276 - 0.40942
rpsG LEPBI_I1968 30S ribosomal protein S7chromosome I CDS2045290 474 - 0.43038
rpsH LEPBI_I1951 30S ribosomal protein S8chromosome I CDS2035039 399 - 0.408521
rpsI LEPBI_I1389 30S ribosomal protein S9chromosome I CDS1445656 396 + 0.449495
rpsJ LEPBI_I1965 30S ribosomal protein S10chromosome I CDS2041720 309 - 0.417476
rpsK LEPBI_I1941 30S ribosomal protein S11chromosome I CDS2029757 414 - 0.425121
rpsL LEPBI_I1969 30S ribosomal protein S12chromosome I CDS2045778 375 - 0.472
rpsM LEPBI_I1942 30S ribosomal protein S13chromosome I CDS2030182 378 - 0.439153
rpsO LEPBI_I1528 30S ribosomal protein S15chromosome I CDS1593929 267 + 0.397004
rpsP LEPBI_I1660 30S ribosomal protein S16chromosome I CDS1736331 309 + 0.414239
rpsQ LEPBI_I1955 30S ribosomal protein S17chromosome I CDS2036979 270 - 0.385185
rpsR LEPBI_I2098 30S ribosomal protein S18chromosome I CDS2193517 285 - 0.403509
rpsS LEPBI_I1960 30S ribosomal protein S19chromosome I CDS2038997 279 - 0.387097
rpsT LEPBI_I0515 30S ribosomal protein S20chromosome I CDS513407 276 + 0.405797
rpsU LEPBI_I1564 30S ribosomal protein S21chromosome I CDS1631344 219 + 0.378995
rsuA LEPBI_I2272 Ribosomal small subunit pseudouridine synthase A (rRNA pseudouridylate synthase A)chromosome I CDS2339356 732 - 0.35929
serS LEPBI_I3467 Seryl-tRNA synthetasechromosome I CDS3586228 1257 - 0.405728
tgt LEPBI_I2329 Queuine tRNA-ribosyltransferase (tRNA-guanine transglycosylase; Guanine insertion enzyme)chromosome I CDS2400479 1116 - 0.419355
thrS LEPBI_I2402 Threonyl-tRNA synthetase (Threonine--tRNA ligase; ThrRS)chromosome I CDS2470440 1917 - 0.420449
trmD LEPBI_I1663 tRNA (Guanine-N(1)-)-methyltransferase (M1G-methyltransferase; tRNA [GM37] methyltransferase)chromosome I CDS1737393 654 + 0.460245
trmU LEPBI_I1340 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferasechromosome I CDS1393832 1143 + 0.425197
trpS LEPBI_I1129 Tryptophanyl-tRNA synthetase (Tryptophan--tRNA ligase; TrpRS)chromosome I CDS1176545 969 - 0.384933
truA LEPBI_I0549 tRNA pseudouridine synthase Achromosome I CDS547619 795 - 0.445283
truB LEPBI_I1527 tRNA pseudouridine synthase Bchromosome I CDS1592973 930 + 0.469892
tsf LEPBI_I2616 Elongation factor Ts (EF-Ts)chromosome I CDS2706473 597 - 0.437186
tuf LEPBI_I1966 Elongation factor Tu (EF-Tu)chromosome I CDS2042033 1206 - 0.427032
tyrS LEPBI_I1570 Tyrosyl-tRNA synthetase (Tyrosine--tRNA ligase; TyrRS)chromosome I CDS1638637 1227 + 0.436838
valS LEPBI_I0250 Valyl-tRNA synthetase (Valine--tRNA ligase; ValRS)chromosome I CDS239125 2691 + 0.389818