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# Borrelia burgdorferi, B31

>BB_0705 ribonuclease III (rnc)
MMKKKSSDFCLCNERKSQLSKFLENLSIDFSNFDLLNTALCHSSYSNELD
QKSSNNERLEFLGDSVLNLIITDHLYKTYPNKSEGELSKARSYIVSEDSL
SNIAREINLGSYILLGRGEESNDGRNKKGILADAIEAFVGAIYLDSGFSR
ATEFVVGLFDMYIRLMFNRGDFKDYKSLLQEYVQKKYKISPSYKLDKEIG
PDHDKVFCVELYVGENFISNGKGKSKKEAEMRAAEVALKAMENINL
>BB_0731 conserved hypothetical protein
MLIDIDQIKIKKRIRKNIGDIETLKNSIIKHGLIYPIIIDKNKNLIAGLR
RYQALKEIGYKEIEVKVISIENKKTLLEIELDENNVRKSFTRSEANEGEA
YLKIYSESNIIIRFLKFIILKIKNMCKIRNRKI
>BB_0527 conserved hypothetical protein
MNKPLLSELIIDIGNTSIAFALFKDNQVNLFIKMKTNLMLRYDEVYSFFE
ENFDFNVNKVFISSVVPILNETFKNVIFSFFKIKPLFIGFDLNYDLTFNP
YKSDKFLLGSDVFANLVAAIENYSFENVLVVDLGTACTIFAVSRQDGILG
GIINSGPLINFNSLLDNAYLIKKFPISTPNNLLERTTSGSVNSGLFYQYK
YLIEGVYRDIKQMYKKKFNLIITGGNADLILSLIEIEFIFNIHLTVEGVR
ILGNSIDFKFVN
>BB_0347 fibronectin/fibrinogen-binding protein, putative
MIKMSLNYTEINTLIKEIPFTNSLITKIIQPDYKSLVLEIYNKIDNKKFK
ILICLNPNTTRFHITKKNFKKNALKLRFSDFLKSKIQNGKIIKAFQMKNE
RIISLEILQKDMIILFIKLWPSSPNIIATNSNFKILDAYYRRPKIKETTG
EIFLKAKEIHESNKMSDKKIMELKEEYNNTSYTSYSEFLENYYESLNDQI
KKTNIKELLIEKYKKELIVLEKRIDSLKQQIKLLENIENEKEKGELILLN
INKIQKGIKEINLLNYKEEKIKISLNQSLSPKENALQYFKAYKKGKNSFK
TIQNQLKDNLDKFNLIQSKITMLKVENLIPEEEYNQEKTAIKEKEKTPKI
GLHFTYCGFEILIGRNAKENDKLLRHCVKGNDYWLHTRDYPGAYVFIKNQ
KNKTPSLDVLLGAGNLCVFYTKLAKKSGKADLYYTQVKNLRRVKNKKLGL
VIPKAEKNLHIKLDENLIKKIKNQT
>BB_0355 transcription factor, putative
MAFLLNQSVVYPMHGVGTIKDIRTKEFNGEIIDYYEIHFPFNDMIFMVPV
AKVDDFGIRALVSREKVEEVFDVIKEFEGQIDSKKIKDGGHEFYKKSDIL
DTAKLYKFLYKKSTQKELPFYEKRILNDFELILEHEISLALQISFEEAKK
KIKNILVDNKKA
>BB_0820 predicted coding region BB0820
MTKVPLKKIQDFDGNFYELVVATIMRTEQIIDNISLAEHAIFDDKILGQA
FNDVLTGKFRYSIEGR
>BB_0712 RNA polymerase sigma-70 factor (rpoD)
MSDLEKKYSKLIEGIITHLGDRKSLSFSELSNLLPDDILEPEILDCICSV
LEDRGIRLVNKISELDLVVSEDGNDEEEEVEIESDRNFMILDDGFQSDEE
DIDIDVKLDDCDEEDISVKDDLGSGYIKGNVLKDSHSEDPIKLYLKEIGK
EFLLTGNQEVELAKQMDSGESIIENILKNEGLVIENYYNLVNTIYSRMER
EEFFKREKDKDKESSPDYYNKKKRIASFYKIPLKPIQDRLISYVDNKHRV
YDLGGDIFEKNLKKERLALKELLRDIPLYQEELRIFSDDYIDSANKIKDL
QRQQRIILSRLKIEKIRDLRVLGRDLTIAEKKIEIEKSLKLKEDAIKEQI
TEAQLAQKELERIEMYYEYPTDKIISMSEEIAKGKQMMQHAKDQLIKANL
RLVVSIAKKYANRGLHFFDLVQEGNIGLIKAVEKFEYKRGFKFSTYATWW
IRQAITRSISDQARTIRVPVHMIEQINRLNRETRYLIQVLGKDPTDEELS
DRLGWELKKVKTVKSVSREPVSLETPIGEEEDSVLSDFIEDKAIKNPANH
TSFVVLQDQIRAILGTLPEREQEVVKMRFGLEDGYSLTLEEVGLHFNVTR
ERIRQIESKALRRLKNPKKTQKLKDYLEDLN
>BB_0388 DNA-directed RNA polymerase (rpoC)
MKEIKDFERIKIKIASPDQIRNWSYGEVKKSETINYRTLRPEKDGLFCER
IFGTTKEWECYCGKFKSVRYKGIICDRCNVEVTHFKVRRERMGHIELAAP
VAHIWYYKYIPSRIGLLLDITASSLNSILYYEKYVVIEPGDTDLKKMQLL
NEDEYIEARERYGMSFNASMGAEAIKTLLENLDLDELSSKLRIQMIDKDD
KTDKKLLRRLEIIENFKISGNKPEWMIMEVLPVIPPEIRPMVQLDGGRFA
TSDLNDLYRRVINRNNRLRKLLLLNAPEIIVRNEKRMLQESVDSLFDNSH
KRKVVKGSSSRPLKSLSDALKGKQGRFRQNLLGKRVDYSGRSVIVVGPEL
KLHQCGLPAKMALELFKPFVIRRLIESEAVFNIKRAKNLIEQEVDEVWQI
LDLVIKEHPILLNRAPTLHRLGIQAFEPVLVEGKAIKLHPLVCHAYNADF
DGDQMAVHVPLTPAAQAESWALMLSTNNLLNPANGHPIVFPSQDIVLGLY
YLTMEKKNVVGEGKKFLNFNNVILAINNRSLDYNASIYVKIHGEYKKTTA
GRVIFNEALPKGIEFVNKTLSDLELQILISKVYVVHGSSIVIEMLDIIKE
LGFRYATKFGCTISMSDIIVPDEKRTYVERANKEIAKIQNDYAKGVITGE
ERYNNVVSVWLKTNEELTNKMMEILKKDRDGFNVIYMMADSGARGSRNQI
RQLAGMRGLMAKTSGDIIELPIISNFKEGLSVIEFFISTNGARKGLADTA
LKTADAGYLTRRLVDIAQDVVVRIEDCGTINGIKVETVKNGEEILESLKE
KAVGSYSIERIKNPITGEIVLDANEEISEAKIELLEKIGIEKLVIRSVLT
CEAEHGVCQKCYGRDFSKNKPVNIGEAVGIIAAQSIGQPGTQLTMRTFHI
GGVAQAGSEDDKISLKNAFILNGIEGFNVRVDNGILFTRKGTLKIINVFY
EEKIKNIKEIKVLDSQRVIKGIPLFIDKKGSEILSSYIGYVKLRDDNFFI
VSEEQEVSLKAGTKLEIEVGDYVESGKVIGTFDPFAEPIIAEVKGKIKFK
DIILGTTLKEEINTETGNVEKRITDNVFESLDPRIFIIDSSGMEVASYVL
PGDAYLQVEDGQSINIGDIIAKLSKGSEKTQDITGGLPRVNDLFETRIPK
NLTEMAKVSGIVQFKSIQKGKRLINILDEYGVEHKHYIPAGKHLLVRDGD
VVKAGDMLCDGRINPHDVLEILGGISLQEFLLAEIQDVYRKQGVSINDKH
IGVIIKQMMKKVKIVAVGDTNFVYGQKVDKHTFYEQNRKVIEQGGEPAIA
SPILIGVTKTSLNIDSFISAASFQETTKVLTDASIAGKIDDLRGLKENVV
IGHLIPTGTGMGLYKKIKVSENIDSEV
>BB_0771 RNA polymerase sigma factor (rpoS)
MNIFSNEDLNIYLKSVREHKLITHEEEIKLAGQIQRGNAKAKNKMINANL
RLVLKIIKRYAGKGLKIEDLIQEGNLGLIRAAEKYDPNKNTKFSTYASFW
IKQSLQRALNTKTRLVKVPYRKENLILQINKYLTEEEKSPKKEEIMKRFN
LSPAQYIKIIPYLEKEYSLDKEIEGSENSTLLNLYEDNSFNPEITLEQDS
TLKHLNYILETKLNEKERYIIKKRYNLDNSPKKSTLKDISTELGISSETV
RQIEKRVLKKLKEEIN
>BB_0800 N-utilization substance protein A (nusA)
MIKGTGHMIVNIANDRGMSIDSIRKTIKESVLIAYKKYFGSNENAFIKFD
DDTGDLSVYAKKKIVKEVKDSLLEILEKDISKENIVEGDYAYIEINPKVF
DRLSIQVAKQRTKNDLQGIEDNEILSEFKSKLNKVVIGYVQQNRNGDLYV
NLGNTDGIIPKKYQSPREVYNLNDKIRVLVYNVKKGKNGIEVILSRTHPK
FIEELLALEIPEIEEGIIKIHKIVRDPGYRIKVAVYSEKEEIDPVGPCIG
QKGVRIQSIIKELEGEKIDIIPYSKDIKEFIKDSLTPSKIEHVYILDEDL
HKALVVVSDDQLSLAIGKMGQNVRLANRLLDWAIDVKTSSQFAEMKANSE
FKQETLEMFDKVMQDVVEEEQFEEISKISDLKLLDPSVISNLSKEGFDDI
NNFLQADEGVLFNLGVSYEKQEEINKILKEGMIIIANDNDESMEKVEEDE
ELLCPECGVVINENMTSCPGCKIGLSFEFEEE
>BB_0230 transcription termination factor Rho (rho)
MDKKNGGFDLESEIRRLDVSKEFKIEDNLKKKVVKVVAKKDSASSVTKSA
DLSGVKDSNGVIFSDFDYDIPSSGLENNIKTLEQSNIIKFFNGKDYVEIE
KLYDKPITEVRKIVEGLGTNHTIAVTMKKTELIFLLVKILSENNIDVLFT
GVLDVLSDGYGFLRTASNSYLSGGNDVYVSPSQIRLFNLRTGDILYGQIR
SPRDGERFFAMVKIKSINDQDPTFAQNRIPFDNLTPLYPNVKLNLEYENC
NISTRLINLFSPIGKGQRALIVSPPKAGKTTLLQKIANAITTNYSDVILM
ILLIDERPEEVTDMIRSVKGEVIASNFDEQASRHVQVAEMVIEKAKRLVE
NKKDVVILLDSITRLARAYNQTMPTSGKILSGGVDSNALHKPKRFFGSAR
NIEEGGSLTIIATALVDTGSKMDEVIFEEFKSTGNMELILDRSLADRRLF
PAINIKKSGTRKEELLLSEEERSKILLIRRILGGVDDYEGVEVLIEKMKK
SKNNEIFLKTMSNGN
>BB_0831 xylose operon regulatory protein (xylR-2)
MRINMKHYLAIDIGGTSTKYSLSDSSGVFFDKNEISTGATSDEQVNILVN
IINSYKESSDIAGVAICIPGFVDLKGNVLRVNAISGFVNYPLKERLESLT
GVSTEIENDANCVALAEKFKGNAIDSNNFIAITLGTGIGAGIFANGKLLR
GNSFMSGEVGFMITGGISNNIPFNCKWESIASVSALRKRVAMRLGKPLKE
VSGEFVFDLAENGNIHAKNEVDRFFENLSFGIFNLTFILNPEKILIGGGI
SARPDLIDRIYEKLENLWSLEMAFDNNNNIKNLVALEPTKFNNESGKIGA
LFHYFTCKNQNNTSF
>BB_0502 DNA-directed RNA polymerase (rpoA)
MMLVEKFLKDFTIPEKIEFLKSQGDGSYGKFTIYPFERGFGITIGNTLRR
VLLSSIEGYAITAMRVQSNNKDSSSKVVSSEFDLIPGVSEDTLEIIANIK
NIHLKLGEGEQRKTISFSVSGKDTNVLKASHFERDGVEVFNKDLVIATLS
HDVNLDLEFQINYGRGYVSSEQNSKYLEEVNVIALDSIFSPIEKVSYSVE
DTRVGQRSDYDKLVMEIWTTGVISAKDAIKKAASIVREFLFPLVDFEDNV
NTSFEKSKSESSNLLDMSIEKLNLSVRSLNCLAKENVRTLGELISKNAEE
LSKARNFGKKSLEEIIEKLGSYRLYLGMSKEDALSVLSKNVKISE
>BB_0783 predicted coding region BB0783
MRKDLIFLFLIVLIIASVVIFFIRSSKKELVYFELNTKSNISFLFLIEDL
NKNLVSMQEIFINMKTGNIGFFDIPIHTGYEDLKGNISWFKDLYKKNSFN
KFLSKIYTQLSHESDYYIRFQKENFVRLIDYLGGVRLLVKNPVKVYSFED
SILIPSGTSNFDGDKAYDYLRYFNDVNQFEERVEFFKEFFKRLLFQISDF
GIENDSFFKIYSMLDTNLSEVVFKYIVKNYKINNDKIISINIKGQEEIFK
DNDNNLIKVVFPYYGGAILKESVDKLNKELVNEGAEEIVKIVVLNGTKVV
GLAKKTANIFNSLKFKVLKFGNADKNSYKNTLIINNSDNLEMAVRVGEVI
KTSNIKPISEVQAKRLLELDNLDINPDVIVILGDDFDGRYVKSK
>BB_A52 outer membrane protein
MIKFKLILIFFLFIVSTTYASVARPFDFRKWNFKKDIDLAYVLMHDLDNG
ILIKSQDKAGSIKSQEVLTKLNALNAYCNNLQRIIKAKLVRGRFQKEVEL
PLLKIIRKYKYLTRNYKNKSLIENPEYTKLIAERIIKKALFLENYFQSNR
LKNVKSGENIKKRISDNQSKLKSLRSKPNKSVGSKFSKNSRPSKSPQGVK
KCNKRRILDKYDLNGAESEFLDDPSQESDELEREYQDDELESEDPDDGER
EYQDDRESRDDTFNEDQSEDEFFDSLEDQFI
>BB_0394 transcription antitermination factor (nusG)
MSRAWYVVQTYSQYEKKIEQDIRLLINEGVFGGVVLDVKAPIEKVEEIRN
GKKRIRERKIWPGYILIELDLPEVGWKDIIANIIKVQGVINFVGVSKGQR
PIPINDEEVKSVFMLTGEIKANKSIFMLYDFEEGERVRIKGGPFDSFEGL
ISSIDYERKKLKVAVQIFGRSTPVEVDFQHIEKI
>BB_0450 RNA polymerase sigma-54 factor (ntrA)
MIKQKLKISQNLNSIQIQTIKILSLNQKELTKLILEESENNECLEINSNK
IFFETLKTYRFKKVFYKEDDMIKNQHDIALEKTQTNTSLKEHLLLQLRIQ
RINEDEIKIGEILINNLNSKGFHIINPYDLFKKEEKEKVKKIIELIQKFD
PIGICVPNIIESLILQAKHHKLETNIIKILEKAELLEKTQKKLKEELKIR
SKEFNTALEIIRQKLNPNPTLEFKDPNDTNFYVDPDILIINHNNKFKIKI
KEVNIFKKELKRTSENPQKQKKAKWLIESLRYRDEILAKIGIAIYTLQKE
FLRRGFKSLRPMNLSILSEKISVSKSTISRAIKNKYLKCEWGTILIKELF
SSVGGAKTNEFSKLSIKITVKKLLEANKKMSDKEISVILKSKGISISRRT
VNKYRNELKSEKGRTYYGT
>BB_0389 DNA-directed RNA polymerase (rpoB)
MIKRVHLGQGRADEILDLPNLIEIQLNSYEKFLQLDKLKSKKPLLNEGLE
SVFRNIFPIKSGNGDVALEYERYYIENDALNFTEKECKRKGQSYEAVLKV
RLNLQFLTTGEIRQKDVYMGTIPLMTERGTFIINGAERVVVSQIHRSPGV
VFYKEKDLYSARIIPYRGSWLEFEIDSKKDYLYVKIDRKKRILITLFLRA
LGFDTREKIIETFYNIKKIKVEDGTKRDLPGQYLAKSINIRENMYYRAGD
KITLQDVEDFLQNGVNEIELVDFDGYNDISGKRFVSSNVILNCLEKEDAF
FALKDGSKELPKESVMLAVYGSLFPGEPISIDNAENDLKTIFFSERRYDL
GRVGRYKLSKKFGFDDLTTSVLTMDDIVNTISHLLRIYEGHDILDDIDHL
GNRRVRSVGELLTNIYKGAMSRVEKIAKDRMSNKEVFNLKPQELISVKPI
VSAVKEFFATSQLSQFMDQVNPLAELTHKRRLNALGPGGLSRDRAGFEVR
DVHYTHYGRMCPIETPEGPNIGLIVSLATYSRVNDYGFLETPYRKVVNGV
VTDQLEYLSAIDEEKKCIAQANAAFNSNGKYLEDLVSVRISGDYTTTSPT
NIDYMDVSPRQLISVSSALIPFLEHNDANRALMGSNMQRQAVPLLFPKPP
IVGTGMESVVAKDSGVVVKAKRSGEVILATSSKIVVKPFEAENAKDLDEY
HIVKYERTNQDTCFNQSVLVKEGQKVERGEIIADGPATRYGELALGNNLL
LGVIPWNGFNYEDAILISDRIVKEDLYTSIHIKEFSIEVRETKLGPEKVT
GDIPNVSEKILNKLDENGIIRIGTYVKPGDILVGKVTPKSEGDITPEFRL
LTSIFGEKAKDVKNNSLKVPHGTEGTVIDVQRITKEDVGNLSPGVEEILK
VYVAKKRKLKEGDKMAGRHGNKGVVAKILPVEDMPYLADGTPLDICLNPL
GVPSRMNIGQLMESQLGLAGKYLGESYNVPVFESATNEQIQEKLKTAGFN
PTSKEILYDGYTGEPFENEVMVGVIYMLKLHHLVDDKMHARSTGPYSLVS
QQPLGGKAQFGGQRLGEMEVWALEAYGAAHTLQELLTVKSDDMSGRVKIY
ENIVKGVPTNVSGIPESFNVLMQELRGLGLDLSIYDDAGNQVPLTEKEEE
LINKS
>BB_0107 N-utilization substance protein B (nusB)
MDLMHEVRVLAFQKIYSIDINQSAMDDIFDIFNIEDKDLDIENESIKSFY
SSLVIGTFDNLEHIDSLIRDISLNWSLERMDKVDLAILRMGVYSLKFQNF
ENSKRAIIDEAILIAKKYGSKNSYKFINGILDALLKNMESGIEKK
>BB_0693 xylose operon regulatory protein (xylR-1)
MQGENMVSIRGGNRRKILLSLKNMQYSRTDLARKLSLTNAAVTILTNQMI
KENLLIEVGSRVSDVKKHGRKEILLDINKDYAYSMGVIISSNYFQIGIAN
LKCEVLISETHSFEPPVSAYDILEKIKDHMIEIIWKHNFSRDKFIGLGFS
ITGLIKDKELGIVNDSYGSWIEKDVPVKRILEEYFSLTVYLESYVKNLSL
AEFMGKNIDNIMFFDYTDTAELSIWSGGNVYPGFNNKSGMVSHMIIDYEG
EKNCPTCGNKGCVNMLISNFALQRLISKEFMNGEIPELYEKYEGRLKKVT
IYDIFSLYEKYDFINKIMQDTVKYLAIIIINIQRMLDFNYLVLYGQSFKL
KAFFDLLKEEIKKLNKENIVLKLSSLDTEVSVVGPASSVIFNKFYLTGGD
ID
>BB_0434 stage 0 sporulation protein J (spo0J)
MDGVFKMIDIHLLDIDNDQPRKSVSLVELEELSISIKENGILQPLIVCKA
NDRYKIIVGERRFRAAKLIQLTNIPVIEVDIKESCKDFMPLVENIQRENF
TPVEEAYAYKNIMNKYSLTQKDLSEKIGKSRTYISNLVRILDLEQEILNA
IHRKEISFGHAKVILSLKDRQDRYNLYLIILKKKFSVRDAEKYVKNFSKS
IVKKRELEQDPFLNNIKEFLFDKIQTKIDIKGNQNKGKIEIEYFTAGDLK
RIVSLFGHSS