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COG category: Transcription
Organism: Leptospira biflexa serovar Patoc strain Patoc 1 (Paris), Patoc 1 (Paris)

Number of genes found: 187

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Leptospira biflexa serovar Patoc strain Patoc 1 (Paris), Patoc 1 (Paris)
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA LEPBI_I1443 Putative transcriptional regulatorchromosome I CDS1507708 825 + 0.364848
NA LEPBI_Ia2473 Putative regulator protein, TetR familychromosome I CDS2565682 663 - 0.386124
NA LEPBI_I2624 Putative transcriptional regulator, AraC-typechromosome I CDS2717136 870 + 0.35977
NA LEPBI_I0926 Putative phosphoserine phosphatase RsbU (Sigma factor SigB regulation protein RsbU)chromosome I CDS958186 1368 + 0.364035
NA LEPBI_I1062 Putative sigma factor sigB regulation protein RsbUchromosome I CDS1103047 1761 - 0.396366
NA LEPBI_II0002 Putative chromosome partitioning protein ParBchromosome II CDS839 822 + 0.420925
NA LEPBI_I0212 Putative transcriptional regulator, ArsR familychromosome I CDS204568 345 - 0.385507
NA LEPBI_I3036 Putative transcriptional regulator, TetR familychromosome I CDS3151495 624 + 0.43109
NA LEPBI_I1104 Putative transcriptional regulator, TetR familychromosome I CDS1149196 573 + 0.34555
NA LEPBI_I2834 Hypothetical proteinchromosome I CDS2925926 483 - 0.395445
NA LEPBI_I0068 HTH-type transcriptional regulator, MarR familychromosome I CDS68131 462 - 0.402597
NA LEPBI_I0755 Putative transcriptional regulator, AraC family; putative membrane proteinchromosome I CDS772714 1119 - 0.379803
NA LEPBI_I3226 Putative response regulator receiver, transcriptional regulatory protein (C-terminal)chromosome I CDS3337267 675 + 0.423704
NA LEPBI_I2987 Conserved hypothetical proteinchromosome I CDS3091447 204 + 0.465686
NA LEPBI_I2879 Putative acetyltransferasechromosome I CDS2972568 471 - 0.397028
NA LEPBI_I0887 Putative transcriptional regulator, TetR familychromosome I CDS907411 702 + 0.371795
NA LEPBI_I3044 Hypothetical protein; putative membrane proteinchromosome I CDS3158022 1221 + 0.421785
NA LEPBI_II0026 Putative chromosome partitioning protein ParBchromosome II CDS27405 711 + 0.357243
NA LEPBI_I1427 Putative transcriptional regulatorchromosome I CDS1489906 789 - 0.420786
NA LEPBI_I3011 Putative phosphoserine phosphatase; putative membrane protein; putative signal peptidechromosome I CDS3124815 1926 + 0.34839
NA LEPBI_I2403 Putative transcriptional regulatorchromosome I CDS2472406 594 - 0.395623
NA LEPBI_I0835 Putative transcriptional regulator, TetR familychromosome I CDS848787 621 - 0.394525
NA LEPBI_I3010 Putative bacterial regulatory protein, LysR familychromosome I CDS3123807 918 - 0.35512
NA LEPBI_I3410 Putative transcription antitermination protein nusGchromosome I CDS3529916 540 + 0.368519
NA LEPBI_I0628 Putative transcriptional regulator, LuxR familychromosome I CDS631601 519 - 0.371869
NA LEPBI_I2191 Putative transcriptional regulator, MerR familychromosome I CDS2276203 384 + 0.283854
NA LEPBI_I1121 Putative transcriptional regulatorchromosome I CDS1169303 624 - 0.423077
NA LEPBI_I2690 Putative phosphoserine phosphatase; putative membrane proteinchromosome I CDS2786874 2085 - 0.361631
NA LEPBI_I1546 Hypothetical proteinchromosome I CDS1611421 420 + 0.359524
NA LEPBI_I3272 Conserved hypothetical proteinchromosome I CDS3385538 792 - 0.381313
NA LEPBI_I0365 Putative negative transcriptional regulatorchromosome I CDS369846 612 - 0.379085
NA LEPBI_p0007 Putative transcriptional regulatorp74 CDS4504 642 - 0.376947
NA LEPBI_I0565 Putative phosphoserine phosphatase RsbU (Sigma factor sigB regulation protein RsbU)chromosome I CDS563230 1962 - 0.362385
NA LEPBI_I1768 Hypothetical protein with TRP repeatschromosome I CDS1845838 1821 - 0.41296
NA LEPBI_I2041 Putative transcriptional regulatorchromosome I CDS2122156 339 - 0.383481
NA LEPBI_I3012 Putative two-component response regulatorchromosome I CDS3126749 738 + 0.359079
NA LEPBI_I0967 Putative transcriptional activator, TenA familychromosome I CDS1002909 696 + 0.462644
NA LEPBI_I2935 Hypothetical protein with putative DNA-binding domain; putative membrane proteinchromosome I CDS3032296 1107 - 0.330623
NA LEPBI_I2444 Hypothetical proteinchromosome I CDS2518810 714 - 0.341737
NA LEPBI_I3376 Conserved hypothetical proteinchromosome I CDS3495382 567 - 0.373898
NA LEPBI_I2474 Putative transcriptional regulator, TetR familychromosome I CDS2557463 663 - 0.3454
NA LEPBI_I0324 Putative phosphoserine phosphatasechromosome I CDS322958 1986 + 0.380161
NA LEPBI_I1981 Putative transcriptional regulator, ArsR familychromosome I CDS2059418 300 + 0.36
NA LEPBI_p0047 Putative transcriptional regulator, TetR familyp74 CDS59426 561 - 0.351159
NA LEPBI_I1805 Hypothetical protein; putative membrane proteinchromosome I CDS1883877 1914 + 0.325496
NA LEPBI_p0005 Putative transcriptional regulator, TetR-familyp74 CDS3342 588 - 0.358844
NA LEPBI_I2218 Putative transcriptional regulatorchromosome I CDS2302056 282 + 0.265957
NA LEPBI_I0100 Transcriptional regulator, TetR familychromosome I CDS101487 579 - 0.367876
NA LEPBI_I2233 Putative transcriptional regulator, MerR familychromosome I CDS2313910 384 + 0.283854
NA LEPBI_I3230 Conserved hypothetical protein; putative membrane proteinchromosome I CDS3341766 2370 + 0.328692
NA LEPBI_p0010 Putative phosphoserine phosphatase; putative membrane proteinp74 CDS5836 1878 + 0.35836
NA LEPBI_I1238 Conserved hypothetical proteinchromosome I CDS1287957 1227 + 0.341483
NA LEPBI_I1087 Putative two-component response regulatorchromosome I CDS1137113 705 + 0.33617
NA LEPBI_I2429 Putative transcriptional regulator, TetR familychromosome I CDS2503338 669 + 0.41704
NA LEPBI_I2995 Hypothetical proteinchromosome I CDS3101915 873 + 0.37457
NA LEPBI_I2488 Putative transcriptional regulatorchromosome I CDS2572045 816 - 0.333333
NA LEPBI_I3056 Hypothetical protein; putative signal peptidechromosome I CDS3168393 816 + 0.447304
NA LEPBI_I3124 Putative phosphate transporter; putative membrane protein; putative signal peptidechromosome I CDS3237034 1977 + 0.388973
NA LEPBI_I0182 Putative response regulator, LuxR familychromosome I CDS176838 672 + 0.388393
NA LEPBI_I2504 Putative transcriptional regulator; putative membrane proteinchromosome I CDS2588753 1260 - 0.344444
NA LEPBI_I3277 Putative response receiverchromosome I CDS3389405 366 + 0.382514
NA LEPBI_I0127 Putative HTH-type transcriptional regulatorchromosome I CDS127573 888 + 0.413288
NA LEPBI_I1422 Putative two-component response regulatorchromosome I CDS1484784 684 - 0.464912
NA LEPBI_I2252 Conserved hypothetical proteinchromosome I CDS2325629 267 + 0.303371
NA LEPBI_I0798 Putative transcriptional regulator, MarR familychromosome I CDS815330 402 + 0.383085
NA LEPBI_I0208 Putative HTH-type transcriptional regulator, TetR familychromosome I CDS201514 633 - 0.436019
NA LEPBI_I1549 Two-component response regulatorchromosome I CDS1616701 1002 + 0.373253
NA LEPBI_II0151 Putative two-component response regulatorchromosome II CDS147725 1191 + 0.36272
NA LEPBI_I2932 RNA polymerase ECF-type sigma factorchromosome I CDS3028611 711 - 0.393812
NA LEPBI_I0617 Putative transcriptional regulator, PadR familychromosome I CDS620428 549 + 0.326047
NA LEPBI_I2806 Hypothetical protein; putative membrane proteinchromosome I CDS2902754 1149 + 0.318538
NA LEPBI_II0101 Hypothetical proteinchromosome II CDS98310 846 - 0.416076
NA LEPBI_I0370 Putative transcriptional regulator, PadR familychromosome I CDS373154 300 - 0.323333
NA LEPBI_II0090 Putative response regulatory proteinchromosome II CDS88795 657 + 0.401826
NA LEPBI_I3294 Putative protein phosphatase; putative membrane proteinchromosome I CDS3406347 1818 - 0.338284
NA LEPBI_I2526 Putative two-component response regulatorchromosome I CDS2612685 639 + 0.341158
NA LEPBI_I1453 Putative bifunctional protein: transcriptional regulator/amino transferasechromosome I CDS1515789 1428 - 0.361345
NA LEPBI_I2639 Putative serine phosphatasechromosome I CDS2732509 1245 - 0.362249
NA LEPBI_I0536 Putative phosphoserine phosphatasechromosome I CDS532202 1284 + 0.363707
NA LEPBI_I1600 Putative acetyltransferasechromosome I CDS1676624 456 + 0.390351
NA LEPBI_I3355 Putative transcriptional regulator, TetR familychromosome I CDS3466480 582 - 0.367698
NA LEPBI_I2339 Putative two-component regulatory response regulator, LuxR familychromosome I CDS2410314 621 + 0.460548
NA LEPBI_I3424 Putative transcriptional regulatorchromosome I CDS3543629 660 + 0.416667
NA LEPBI_I1926 Putative two-component regulatorchromosome I CDS2014226 1128 - 0.382092
NA LEPBI_p0023 Putative transcription regulator; putative membrane proteinp74 CDS27807 1125 + 0.389333
NA LEPBI_I3033 Putative transcriptional regulator, AraC family; putative membrane proteinchromosome I CDS3146861 1674 - 0.358423
NA LEPBI_I3147 Putative transcriptional regulator, TetR familychromosome I CDS3261913 621 + 0.331723
NA LEPBI_I0239 Conserved hypothetical proteinchromosome I CDS229845 954 - 0.390985
NA LEPBI_I3027 Putative transcriptional regulator, TetR familychromosome I CDS3139300 627 - 0.341308
NA LEPBI_I3048 Putative transcriptional regulator, TetR familychromosome I CDS3161068 576 - 0.451389
NA LEPBI_I0366 Putative acetyltransferasechromosome I CDS370485 450 - 0.342222
NA LEPBI_I2260 Putative transcriptional regulator, MerR familychromosome I CDS2332491 393 + 0.284987
NA LEPBI_I2784 Putative transcriptional regulator, MarR familychromosome I CDS2881496 438 - 0.363014
NA LEPBI_II0237 Two-component response regulatorchromosome II CDS230738 726 + 0.406336
NA LEPBI_I2223 Putative ATP-binding proteinchromosome I CDS2305370 1413 + 0.326964
NA LEPBI_I0207 Putative acetyltransferasechromosome I CDS200974 447 + 0.380313
NA LEPBI_I2737 Putative transcriptional regulator, AraC familychromosome I CDS2828804 813 - 0.399754
NA LEPBI_I0895 Putative transcriptional regulator, TetR familychromosome I CDS916471 693 - 0.431457
NA LEPBI_I2482 Putative transcriptional regulator, TetR familychromosome I CDS2565024 654 + 0.383792
NA LEPBI_I3320 Putative transcriptional regulator, TetR familychromosome I CDS3432947 591 + 0.409475
NA LEPBI_I3045 Hypothetical proteinchromosome I CDS3159247 288 + 0.395833
NA LEPBI_I0419 Hypothetical proteinchromosome I CDS413678 123 - 0.325203
NA LEPBI_I0743 Putative transcriptional regulatorchromosome I CDS759288 657 + 0.398782
NA LEPBI_I0713 Putative phosphoserine phosphatase; putative membrane proteinchromosome I CDS722166 1704 - 0.411385
NA LEPBI_I0486 Putative two-component response regulatorchromosome I CDS480329 96 - 0.322917
NA LEPBI_I1042 Putative phosphoserine phosphatase RsbP; putative membrane protein; putative signal peptidechromosome I CDS1082144 1926 - 0.373832
NA LEPBI_I1575 Putative phosphodiesterase or phosphatasechromosome I CDS1645608 2748 + 0.396652
NA LEPBI_II0171 Sigma factor SigB regulation protein RsbU; putative phosphoserine phosphatasechromosome II CDS167760 1746 + 0.416953
NA LEPBI_I2030 Hypothetical proteinchromosome I CDS2111534 462 - 0.320346
NA LEPBI_II0143 Putative RNA polymerase ECF-type sigma factorchromosome II CDS138800 519 - 0.400771
NA LEPBI_I2459 Putative serine phosphatase RsbU; putative membrane protein; putative signal peptidechromosome I CDS2542516 1890 - 0.336508
NA LEPBI_I3106 Putative transcriptional regulator, TetR familychromosome I CDS3222818 645 + 0.462016
NA LEPBI_I0889 Putative acyltransferasechromosome I CDS909988 474 - 0.407173
NA LEPBI_I1518 Putative transcriptional regulatorchromosome I CDS1583522 471 + 0.426752
NA LEPBI_II0242 Putative transcriptional regulatorchromosome II CDS232954 324 + 0.441358
NA LEPBI_I2799 Hypothetical protein; putative membrane proteinchromosome I CDS2897165 1089 + 0.325069
NA LEPBI_I0430 Putative transcriptional regulator, ArsR familychromosome I CDS423243 318 - 0.367925
NA LEPBI_I2996 Putative AraC-type transcriptional regulatorchromosome I CDS3102755 897 - 0.370123
NA LEPBI_I2805 Putative transcriptional regulatorchromosome I CDS2901998 567 - 0.372134
NA LEPBI_I3223 Putative RNA polymerase sigma factorchromosome I CDS3335980 489 + 0.380368
NA LEPBI_I1787 Putative transcriptional regulator, MarR familychromosome I CDS1865606 462 - 0.393939
NA LEPBI_I2676 Transcriptional regulator, CarD familychromosome I CDS2773207 582 - 0.405498
NA LEPBI_I2247 Putative helix-turn-helix protein CopGchromosome I CDS2323392 246 + 0.313008
NA LEPBI_I2150 Putative RNA polymerase sigma-70 factorchromosome I CDS2238925 579 - 0.426598
NA LEPBI_II0039 Hypothetical proteinchromosome II CDS37719 642 + 0.376947
NA LEPBI_p0002 Putative chromosome partitioning protein ParBp74 CDS1106 879 + 0.358362
NA LEPBI_I1420 Putative phosphoserine phosphatasechromosome I CDS1482221 1737 + 0.388025
NA LEPBI_I1716 Putative transcriptional regulatorchromosome I CDS1788092 414 + 0.39372
NA LEPBI_I1743 Putative sigma factor sigB regulation protein RsbU; putative membrane protein; putative signal peptidechromosome I CDS1818570 1518 - 0.381423
NA LEPBI_I1241 Putative transcriptional regulator, ArsR familychromosome I CDS1290819 363 - 0.418733
NA LEPBI_I0398 Putative transcriptional regulator (DNA-binding domain)chromosome I CDS396534 813 - 0.316113
NA LEPBI_I1147 Putative transcriptional regulator, MarR familychromosome I CDS1194464 459 + 0.379085
NA LEPBI_I2109 Putative RNA polymerase sigma-E factorchromosome I CDS2204128 570 + 0.412281
NA LEPBI_I2136 ATP-dependent RNA helicasechromosome I CDS2228150 1590 - 0.433962
NA LEPBI_I2820 Hypothetical protein; putative membrane proteinchromosome I CDS2913268 1098 - 0.324226
NA LEPBI_II0053 Putative RNA polymerase ECF-type sigma factorchromosome II CDS50668 525 + 0.36381
NA LEPBI_I2786 Putative transcription elongation factorchromosome I CDS2882543 417 + 0.326139
NA LEPBI_I1376 Putative transcriptional regulatorchromosome I CDS1434158 465 + 0.354839
NA LEPBI_I3155 Putative regulatory proteinchromosome I CDS3270269 597 + 0.40201
NA LEPBI_I3347 Putative phosphoserine phosphatase; putative membrane protein; putative signal peptidechromosome I CDS3453921 2022 - 0.347676
NA LEPBI_I0305 Putative phosphoserine phosphatase; putative membrane proteinchromosome I CDS299041 1962 - 0.348624
NA LEPBI_I1541 Putative glycine-rich RNA binding proteinchromosome I CDS1607492 369 - 0.495935
NA LEPBI_I1228 Putative transcriptional regulator, LysR familychromosome I CDS1278737 903 - 0.365449
NA LEPBI_I1458 Putative protein phosphatase; putative membrane protein; putative signal peptidechromosome I CDS1519191 2085 - 0.377938
NA LEPBI_I0170 Conserved hypothetical proteinchromosome I CDS165055 1107 - 0.438121
NA LEPBI_I1070 Putative RNA polymerase sigma-70-like factorchromosome I CDS1112235 954 - 0.360587
NA LEPBI_I3002 Putative transcriptional regulator, TetR familychromosome I CDS3108983 687 + 0.3377
NA LEPBI_I0094 Putative two-component response regulatorchromosome I CDS95348 930 + 0.376344
NA LEPBI_I2515 Putative two-component response regulatorchromosome I CDS2598297 768 - 0.321615
NA LEPBI_I1454 Putative aspartate aminotransferase (Transaminase A; ASPAT)chromosome I CDS1517259 1194 + 0.404523
NA LEPBI_I2450 Putative serine phosphatase RsbU regulator; putative membrane protein; putative signal peptidechromosome I CDS2526817 1968 + 0.341972
NA LEPBI_I0295 Putative transcriptional regulator, TetR familychromosome I CDS290639 579 - 0.374784
NA LEPBI_I2931 RNA polymerase ECF-type sigma factorchromosome I CDS3028403 201 - 0.447761
NA LEPBI_I1222 Putative transcriptional factor; putative membrane proteinchromosome I CDS1273489 1317 - 0.350797
NA LEPBI_I0118 Conserved hypothetical proteinchromosome I CDS121989 597 - 0.40201
NA LEPBI_I3422 Hypothetical proteinchromosome I CDS3542031 489 + 0.384458
arsR1 LEPBI_I2871 Arsenical resistance operon repressorchromosome I CDS2965000 336 + 0.389881
arsR2 LEPBI_I2885 Arsenical resistance operon repressorchromosome I CDS2977467 351 - 0.441595
arsR3 LEPBI_I3345 Arsenical resistance operon repressor, transcriptional regulator, ArsR familychromosome I CDS3451927 363 - 0.410468
creB LEPBI_I0395 Transcriptional regulatory protein CreBchromosome I CDS392958 678 + 0.383481
cueR LEPBI_I2741 Transcriptional activator/repressor,heavy-metal dependent, MerR familychromosome I CDS2832590 393 + 0.37659
deaD LEPBI_II0208 ATP-dependent RNA helicase, DEAD-box family (DeaD)chromosome II CDS209193 1605 + 0.437383
fliA LEPBI_I0946 RNA polymerase sigma factor for flagellar operonchromosome I CDS978240 801 + 0.421973
gclK LEPBI_I1496 Glucokinase (Glucose kinase)chromosome I CDS1556788 897 - 0.411371
greA LEPBI_I2333 Transcriptional elongation factor, GreA/GreB familychromosome I CDS2404562 2766 - 0.39154
hcrA LEPBI_I3381 Heat-inducible transcription repressor HrcAchromosome I CDS3500627 1041 - 0.417867
hepA LEPBI_I3440 ATP-dependent RNA helicasechromosome I CDS3559378 2847 + 0.361433
lexA LEPBI_I1316 LexA repressorchromosome I CDS1372939 609 + 0.474548
mfd LEPBI_I1823 Transcription-repair coupling factor (TRCF; ATP-dependent helicase Mfd)chromosome I CDS1906326 3423 - 0.378907
nusA LEPBI_I1524 N utilization substance protein Achromosome I CDS1588275 1401 + 0.460385
nusB LEPBI_I2139 N utilization substance protein B-like protein (Protein NusB); L factorchromosome I CDS2232680 423 - 0.434988
nusG LEPBI_I1977 Transcription antitermination protein NusGchromosome I CDS2056576 555 - 0.412613
parB LEPBI_I3473 Chromosome partitioning protein ParBchromosome I CDS3592012 897 - 0.400223
rbpA1 LEPBI_I2801 RNA-binding proteinchromosome I CDS2898749 264 - 0.340909
rbpA2 LEPBI_I1881 RNA binding proteinchromosome I CDS1974228 270 - 0.381481
rbpA3 LEPBI_I3127 RNA-binding proteinchromosome I CDS3241557 264 + 0.378788
recG LEPBI_I0349 ATP-dependent DNA helicase RecGchromosome I CDS347933 2061 + 0.388646
rhlE LEPBI_I2827 ATP-dependent RNA helicase RhlEchromosome I CDS2919379 1416 - 0.410311
rho LEPBI_I1032 Transcription termination factor Rhochromosome I CDS1073886 1404 + 0.451567
rnc LEPBI_I2584 Ribonuclease IIIchromosome I CDS2671343 729 - 0.411523
rnr LEPBI_I0020 Ribonuclease Rchromosome I CDS19860 2193 - 0.367533
rpoA LEPBI_I1939 DNA-directed RNA polymerase alpha chainchromosome I CDS2028112 978 - 0.392638
rpoB LEPBI_I1972 DNA-directed RNA polymerase beta chain (RNAP beta subunit; Transcriptase beta chain) (RNA polymerase beta subunit)chromosome I CDS2050616 3687 - 0.442365
rpoC LEPBI_I1971 DNA-directed RNA polymerase beta' chainchromosome I CDS2046300 4302 - 0.451883
rpoD LEPBI_I1567 RNA polymerase sigma factor rpoD (Sigma-70)chromosome I CDS1633878 1773 + 0.406091
rpoN LEPBI_I1650 RNA polymerase sigma-54 factorchromosome I CDS1725094 1422 + 0.376231
scpB LEPBI_I2388 Chromosome segregation and condensation protein ScpBchromosome I CDS2460071 639 - 0.380282