Gene list
Applied filters:
COG category: Replication, recombination and repair
Organism: Treponema pallidum
Number of genes found: 62
Show UniProt / TrEMBL protein name | View in Fasta format (DNA) | View in Fasta format (Protein) | ||||
Treponema pallidum | ||||||||
---|---|---|---|---|---|---|---|---|
Name | Locus tag | Product / Description | Genomic element | Type | Begin | Length | Strand | GC-content |
TP0001 | chromosomal replication initiator protein (dnaA) | chromosome | CDS | 4 | 1395 | + | 0.407168 | |
TP0002 | DNA polymerase III, subunit beta (dnaN) | chromosome | CDS | 1641 | 1116 | + | 0.413082 | |
TP0003 | recF protein (recF) | chromosome | CDS | 2623 | 1212 | + | 0.435644 | |
TP0005 | DNA gyrase, subunit A (gyrA) | chromosome | CDS | 4391 | 2442 | + | 0.47543 | |
TP0014 | T. pallidum predicted coding region TP0014 | chromosome | CDS | 13167 | 609 | + | 0.489327 | |
TP0058 | replicative DNA helicase (dnaB) | chromosome | CDS | 67640 | 1317 | - | 0.529992 | |
TP0062 | single-strand DNA binding protein (ssb) | chromosome | CDS | 70165 | 531 | - | 0.538606 | |
TP0065 | conserved hypothetical protein | chromosome | CDS | 71776 | 588 | + | 0.498299 | |
TP0102 | rep helicase, single-stranded DNA-dependent ATPase (rep) | chromosome | CDS | 109750 | 1974 | - | 0.450861 | |
TP0103 | ATP-dependent DNA helicase, putative | chromosome | CDS | 111788 | 1824 | + | 0.527412 | |
TP0105 | DNA polymerase I (polA) | chromosome | CDS | 115806 | 2994 | + | 0.447562 | |
TP0116 | excinuclease ABC, subunit B (uvrB) | chromosome | CDS | 132863 | 2007 | + | 0.453413 | |
TP0125 | exodeoxyribonuclease (exoA) | chromosome | CDS | 146754 | 795 | + | 0.566038 | |
TP0141 | methylated-DNA-protein-cysteine S-methyltransferase (dat) | chromosome | CDS | 161909 | 534 | + | 0.559925 | |
TP0162 | Holliday junction DNA helicase (ruvB) | chromosome | CDS | 183384 | 1053 | - | 0.585945 | |
TP0229 | DNA polymerase, bacteriophage-type | chromosome | CDS | 237401 | 834 | + | 0.555156 | |
TP0230 | primosomal protein N (priA) | chromosome | CDS | 238239 | 1974 | + | 0.562817 | |
TP0251 | DNA-binding protein II | chromosome | CDS | 262929 | 318 | + | 0.54717 | |
TP0303 | DNA mismatch repair protein (mutL) | chromosome | CDS | 315967 | 1947 | - | 0.575244 | |
TP0310 | T. pallidum predicted coding region TP0310 | chromosome | CDS | 326392 | 384 | + | 0.585938 | |
TP0328 | DNA mismatch repair protein (mutS) | chromosome | CDS | 347468 | 2703 | + | 0.540881 | |
TP0343 | A/G-specific adenine glycosylase, putative | chromosome | CDS | 365621 | 834 | + | 0.495204 | |
TP0344 | transcription-repair coupling factor (trcF) | chromosome | CDS | 366459 | 3423 | - | 0.496348 | |
TP0353 | ribonuclease H (rnhA) | chromosome | CDS | 377198 | 510 | - | 0.6 | |
TP0380 | DNA repair helicase, putative | chromosome | CDS | 405261 | 1821 | - | 0.548051 | |
TP0391 | integrase/recombinase (codV) | chromosome | CDS | 416004 | 921 | + | 0.5038 | |
TP0393 | smf protein (smf) | chromosome | CDS | 417663 | 909 | + | 0.49725 | |
TP0394 | DNA topoisomerase I (topA) | chromosome | CDS | 418604 | 2196 | + | 0.478142 | |
TP0395 | integrase/recombinase (xprB) | chromosome | CDS | 420792 | 894 | + | 0.517897 | |
TP0442 | DNA repair protein (recN) | chromosome | CDS | 467790 | 1722 | + | 0.551103 | |
TP0472 | excinuclease ABC, subunit C (uvrC) | chromosome | CDS | 499677 | 2076 | - | 0.507225 | |
TP0492 | DNA primase (dnaG) | chromosome | CDS | 526077 | 1818 | + | 0.510451 | |
TP0514 | excinuclease ABC, subunit A (uvrA) | chromosome | CDS | 550459 | 2883 | + | 0.473118 | |
TP0517 | Holliday junction nuclease (ruvC) | chromosome | CDS | 557904 | 591 | - | 0.468697 | |
TP0521 | DNA polymerase III, gamma and tau subunits, putative | chromosome | CDS | 561736 | 1272 | - | 0.495283 | |
TP0526 | ATP-dependent helicase (hrpA) | chromosome | CDS | 568144 | 2007 | + | 0.494768 | |
TP0543 | Holliday junction DNA helicase (ruvA) | chromosome | CDS | 584926 | 684 | - | 0.520468 | |
TP0588 | conserved hypothetical protein | chromosome | CDS | 639853 | 765 | - | 0.482353 | |
TP0626 | exonuclease, putative | chromosome | CDS | 681001 | 1176 | + | 0.491497 | |
TP0627 | exonuclease (sbcC) | chromosome | CDS | 682173 | 3144 | + | 0.465649 | |
TP0634 | DNA ligase (lig) | chromosome | CDS | 692381 | 2472 | + | 0.511731 | |
TP0636 | conserved hypothetical protein | chromosome | CDS | 694887 | 771 | - | 0.511025 | |
TP0643 | DNA polymerase III, subunit epsilon (dnaQ) | chromosome | CDS | 704799 | 648 | + | 0.466049 | |
TP0669 | DNA polymerase III, subunit alpha (dnaE) | chromosome | CDS | 730608 | 3513 | - | 0.44378 | |
TP0687 | DNA recombinase (recG) | chromosome | CDS | 752821 | 2061 | - | 0.425036 | |
TP0692 | recA protein (recA) | chromosome | CDS | 758729 | 1224 | - | 0.510621 | |
TP0704 | single-stranded-DNA-specific exonuclease (recJ) | chromosome | CDS | 768570 | 2121 | - | 0.532296 | |
TP0710 | conserved hypothetical protein | chromosome | CDS | 776685 | 1971 | + | 0.523085 | |
TP0731 | conserved hypothetical protein | chromosome | CDS | 796674 | 711 | + | 0.589311 | |
TP0770 | ATP-dependent RNA helicase | chromosome | CDS | 835978 | 1950 | + | 0.534872 | |
TP0775 | endonuclease III (nth) | chromosome | CDS | 842892 | 636 | + | 0.551887 | |
TP0810 | DNA adenine methyltransferase (dam) | chromosome | CDS | 878660 | 912 | + | 0.550439 | |
TP0898 | ATP-dependent nuclease, subunit A, putative | chromosome | CDS | 975830 | 3720 | - | 0.579839 | |
TP0899 | T. pallidum predicted coding region TP0899 | chromosome | CDS | 979546 | 588 | - | 0.537415 | |
TP0913 | conserved hypothetical protein | chromosome | CDS | 991495 | 381 | + | 0.488189 | |
TP0979 | conserved hypothetical protein | chromosome | CDS | 1062241 | 774 | + | 0.516796 | |
TP0994 | conserved hypothetical protein | chromosome | CDS | 1078616 | 810 | + | 0.546914 | |
TP1004 | recombination protein (recR) | chromosome | CDS | 1092553 | 606 | - | 0.559406 | |
TP1005 | DNA polymerase III, subunits gamma and tau (dnaH) | chromosome | CDS | 1093232 | 1719 | - | 0.504363 | |
TP1006 | DNA gyrase, subunit B (gyrB) | chromosome | CDS | 1095009 | 1914 | - | 0.483804 | |
TP1028 | DNA helicase II (uvrD) | chromosome | CDS | 1121029 | 2013 | - | 0.554396 | |
TP1029 | T. pallidum predicted coding region TP1029 | chromosome | CDS | 1123124 | 687 | - | 0.614265 |