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2024-05-10 06:34:09

Gene list

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COG category: Replication, recombination and repair
Organism: Leptospira biflexa serovar Patoc strain Patoc 1 (Paris), Patoc 1 (Paris)

Number of genes found: 105

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Leptospira biflexa serovar Patoc strain Patoc 1 (Paris), Patoc 1 (Paris)
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA LEPBI_I1287 Putative A/G-specific DNA glycosylasechromosome I CDS1342450 1062 + 0.38983
NA LEPBI_I3091 Transposase, IS30 familychromosome I CDS3203654 993 + 0.35146
NA LEPBI_I2906 Conserved hypothetical proteinchromosome I CDS3001360 1092 - 0.391941
NA LEPBI_I2396 Conserved hypothetical proteinchromosome I CDS2467584 513 - 0.438596
NA LEPBI_II0248 Hypothetical proteinchromosome II CDS236564 1230 - 0.356911
NA LEPBI_I1205 Putative integrase/recombinasechromosome I CDS1257441 897 - 0.329989
NA LEPBI_I1116 Putative HNH endonucleasechromosome I CDS1163328 294 - 0.377551
NA LEPBI_I1295 Putative ATPase involved in DNA replicationchromosome I CDS1349946 1260 + 0.461111
NA LEPBI_I1344 Putative methyltransferase DNA modification enzymechromosome I CDS1399528 1158 + 0.38601
NA LEPBI_I0171 Putative hydrolasechromosome I CDS166221 627 - 0.432217
NA LEPBI_I1212 Hypothetical proteinchromosome I CDS1264442 141 - 0.397163
NA LEPBI_I2313 Conserved hypothetical proteinchromosome I CDS2382637 675 - 0.367407
NA LEPBI_I0533 Putative methyltransferasechromosome I CDS528999 615 + 0.38374
NA LEPBI_I1792 Conserved hypothetical proteinchromosome I CDS1870170 1077 + 0.400186
NA LEPBI_I3318 Putative crossover junction endodeoxyribonuclease RuvC (Holliday junction nuclease ruvC)chromosome I CDS3431590 477 + 0.484277
NA LEPBI_I1719 Putative ATP-dependent helicasechromosome I CDS1790301 1986 + 0.382679
NA LEPBI_II0036 Putative DNA-binding protein (HU-like protein)chromosome II CDS35218 306 + 0.392157
NA LEPBI_I1290 Putative DNA mismatch repair proteinchromosome I CDS1346701 276 + 0.456522
NA LEPBI_I2275 Hypothetical proteinchromosome I CDS2343206 258 + 0.317829
NA LEPBI_I0753 Putative helicasechromosome I CDS768582 3141 - 0.351799
NA LEPBI_I3468 Putative hydrolasechromosome I CDS3587477 819 - 0.373626
NA LEPBI_I3182 Putative DNA repair system specific for alkylated DNAchromosome I CDS3294482 609 - 0.385879
NA LEPBI_I0047 Transposase, IS30 familychromosome I CDS45843 993 - 0.349446
NA LEPBI_I2544 Putative DNA repair helicasechromosome I CDS2632227 1698 - 0.425206
NA LEPBI_II0133 Putative helicase, ATP-dependentchromosome II CDS129774 2466 - 0.380373
NA LEPBI_I3287 Conserved hypothetical proteinchromosome I CDS3398694 423 - 0.330969
NA LEPBI_p0033 Putative protein with DEAD/DEAH box helicase and with type III restriction enzyme motifp74 CDS43454 4944 - 0.408576
NA LEPBI_I2540 DNA-binding stress protein, Dps familychromosome I CDS2628472 471 + 0.420382
NA LEPBI_I2136 ATP-dependent RNA helicasechromosome I CDS2228150 1590 - 0.433962
NA LEPBI_I0633 Putative DNA repair photolyasechromosome I CDS638462 999 - 0.357357
NA LEPBI_I2161 Putative DNA polymerasechromosome I CDS2249020 2664 + 0.353979
NA LEPBI_I3269 Putative integrasechromosome I CDS3383010 660 + 0.418182
NA LEPBI_I0334 Putative DNA mismatch repair protein; putative membrane proteinchromosome I CDS334985 1542 - 0.353437
NA LEPBI_I2847 Putative ribonuclease Hchromosome I CDS2938489 414 + 0.374396
NA LEPBI_I2175 Putative ATPasechromosome I CDS2261672 1464 + 0.335383
NA LEPBI_I0690 Putative DNA processing chain A DprA, SMF familychromosome I CDS697908 927 + 0.413161
NA LEPBI_I1630 Putative DNA repair protein RecNchromosome I CDS1703654 1710 + 0.438012
NA LEPBI_I1379 Putative helicasechromosome I CDS1436065 1782 - 0.398429
NA LEPBI_I1217 Putative transposase B, catalytic regionchromosome I CDS1268793 621 + 0.344605
NA LEPBI_I0471 Putative integrase/recombinasechromosome I CDS465708 1287 - 0.362859
NA LEPBI_I1669 Conserved hypothetical proteinchromosome I CDS1741523 345 + 0.373913
NA LEPBI_I2709 Conserved hypothetical proteinchromosome I CDS2804703 3231 + 0.421541
NA LEPBI_I1665 Putative ribonuclease Hchromosome I CDS1738756 465 + 0.43871
NA LEPBI_I2170 Putative nucleoside triphosphate hydrolasechromosome I CDS2256000 1377 + 0.318083
NA LEPBI_I0809 Conserved hypothetical proteinchromosome I CDS823171 297 + 0.417508
NA LEPBI_I2365 Conserved hypothetical protein; putative signal peptidechromosome I CDS2436170 1680 - 0.390476
NA LEPBI_I3056 Hypothetical protein; putative signal peptidechromosome I CDS3168393 816 + 0.447304
NA LEPBI_I2068 Conserved hypothetical proteinchromosome I CDS2158091 543 + 0.412523
NA LEPBI_I0568 Putative methylated DNA-protein cysteine methyltransferase, C-terminal domainchromosome I CDS568412 294 - 0.37415
ada LEPBI_II0134 Bifunctional protein: transcriptional regulator of DNA repair/O6-methylguanine-DNA methyltransferasechromosome II CDS132358 861 + 0.390244
deaD LEPBI_II0208 ATP-dependent RNA helicase, DEAD-box family (DeaD)chromosome II CDS209193 1605 + 0.437383
dinP LEPBI_II0150 DNA polymerase IV, devoid of proofreading, damage-inducible protein Pchromosome II CDS146635 1077 - 0.376045
dnaA LEPBI_I0001 Chromosomal replication initiator protein DnaAchromosome I CDS141 1326 + 0.394419
dnaB LEPBI_I2096 Replicative DNA helicasechromosome I CDS2191697 1344 - 0.438988
dnaC LEPBI_I0269 DNA replication protein DnaCchromosome I CDS263176 870 + 0.426437
dnaE LEPBI_I2936 DNA polymerase III alpha subunitchromosome I CDS3033408 3522 - 0.390119
dnaG LEPBI_I1566 DNA primasechromosome I CDS1632050 1812 + 0.415011
dnaN LEPBI_I0002 DNA polymerase III, beta chainchromosome I CDS1713 1119 + 0.364611
dnaX1 LEPBI_I3461 DNA polymerase III gamma subunitchromosome I CDS3579644 1494 + 0.366801
dnaX2 LEPBI_I3479 DNA polymerase III subunit gamma/tauchromosome I CDS3598605 933 + 0.386924
endA LEPBI_I1902 Endonuclease I; putative signal peptidechromosome I CDS1994246 774 + 0.423773
exoA LEPBI_I1829 Exodeoxyribonucleasechromosome I CDS1918120 771 + 0.411154
gyrA1 LEPBI_I0006 DNA gyrase subunit Achromosome I CDS6272 2532 + 0.401659
gyrA2 LEPBI_I0679 DNA gyrase/topoisomerase, type IV, subunit Achromosome I CDS684784 1386 + 0.391053
gyrB1 LEPBI_I0005 DNA gyrase subunit Bchromosome I CDS4333 1920 + 0.405729
gyrB2 LEPBI_I0680 DNA gyrase/topoisomerase, type IIa, subunit Bchromosome I CDS686176 2127 + 0.406676
hepA LEPBI_I3440 ATP-dependent RNA helicasechromosome I CDS3559378 2847 + 0.361433
ligA LEPBI_I0217 DNA ligase (Polydeoxyribonucleotide synthase [NAD+])chromosome I CDS207283 2016 - 0.402778
mfd LEPBI_I1823 Transcription-repair coupling factor (TRCF; ATP-dependent helicase Mfd)chromosome I CDS1906326 3423 - 0.378907
mutL LEPBI_I2151 DNA mismatch repair protein MutLchromosome I CDS2239591 1845 - 0.463415
mutS LEPBI_I0833 DNA mismatch repair protein MutSchromosome I CDS845632 2502 - 0.382894
nth LEPBI_I1021 Endonuclease III (DNA-(apurinic or apyrimidinic site) lyase)chromosome I CDS1064891 642 + 0.461059
nudH LEPBI_I3326 (Di)nucleoside polyphosphate hydrolase, Nudix hydrolase family (Invasion protein A)chromosome I CDS3437132 519 + 0.373796
pcrA1 LEPBI_I1634 ATP-dependent DNA helicase PcrAchromosome I CDS1709375 2184 + 0.36859
pcrA2 LEPBI_I2378 ATP-dependent DNA helicase PcrAchromosome I CDS2450345 1284 + 0.367601
pcrA3 LEPBI_I1736 ATP-dependent DNA helicase PcrAchromosome I CDS1810808 1995 + 0.368421
pcrA4 LEPBI_I2066 ATP-dependent DNA helicase PcrAchromosome I CDS2155278 2037 - 0.442808
phr LEPBI_I2409 Deoxyribodipyrimidine photolyase (DNA photolyase; Photoreactivating enzyme)chromosome I CDS2481168 1491 + 0.373575
polA LEPBI_I0674 DNA polymerase I (POL I)chromosome I CDS677667 2829 - 0.376458
priA LEPBI_I1656 Primosomal protein N' (Replication factor Y)chromosome I CDS1731724 1953 + 0.409626
recA LEPBI_I2446 Protein RecA (Recombinase A)chromosome I CDS2520970 1164 + 0.454467
recB LEPBI_p0020 Exodeoxyribonuclease V beta chain, UvrD subfamilyp74 CDS18773 3630 - 0.371625
recC LEPBI_p0021 Exodeoxyribonuclease V gamma chainp74 CDS22399 3204 - 0.356429
recD LEPBI_p0019 ATP-dependent exoDNAse (exonuclease V), alpha subunit, helicase superfamily I memberp74 CDS16974 1803 - 0.374931
recF LEPBI_I0003 DNA replication and repair protein RecFchromosome I CDS2831 1104 + 0.356884
recG LEPBI_I0349 ATP-dependent DNA helicase RecGchromosome I CDS347933 2061 + 0.388646
recJ LEPBI_I1309 Single-stranded-DNA-specific exonuclease RecJchromosome I CDS1363581 1989 - 0.409251
recO LEPBI_I2091 DNA repair protein RecO (Recombination protein O)chromosome I CDS2185296 750 - 0.392
recQ1 LEPBI_I0309 ATP-dependent DNA helicase RecQchromosome I CDS306964 1857 - 0.430802
recQ2 LEPBI_I2503 ATP-dependent DNA helicase RecQchromosome I CDS2587224 1446 - 0.377593
recR LEPBI_I3463 Recombination protein RecRchromosome I CDS3581501 609 + 0.377668
rhlE LEPBI_I2827 ATP-dependent RNA helicase RhlEchromosome I CDS2919379 1416 - 0.410311
ruvA LEPBI_I1501 Holliday junction DNA helicase RuvAchromosome I CDS1561155 600 - 0.391667
ruvB LEPBI_I0524 Holliday junction DNA helicase RuvBchromosome I CDS522943 1026 + 0.489279
ssbA LEPBI_I2099 Single-stranded DNA binding protein (SSB; Helix-destabilizing protein)chromosome I CDS2193874 444 - 0.439189
ssbB LEPBI_I2975 Single-strand binding protein (SSB; Helix-destabilizing protein)chromosome I CDS3078420 354 - 0.39548
topA LEPBI_I1163 DNA topoisomerase Ichromosome I CDS1210111 1878 + 0.355698
ung LEPBI_I0821 Uracil-DNA glycosylase (UDG)chromosome I CDS834571 657 - 0.374429
uvrA LEPBI_I1837 UvrABC system protein A (UvrA protein; Excinuclease ABC subunit A)chromosome I CDS1925901 2865 - 0.431414
uvrB LEPBI_I0845 UvrABC system protein B (UvrB protein; Excinuclease ABC subunit B)chromosome I CDS857245 1995 + 0.390476
uvrC LEPBI_I2076 UvrABC system protein C (UvrC protein; Excinuclease ABC subunit C)chromosome I CDS2168050 1845 - 0.404336
xerC LEPBI_I2445 Tyrosine recombinase XerCchromosome I CDS2519737 936 - 0.382479
xerD LEPBI_I2357 Tyrosine recombinase xerDchromosome I CDS2426704 909 - 0.382838
xseA LEPBI_I1860 Exodeoxyribonuclease VII large subunit (Exonuclease VII large subunit)chromosome I CDS1950641 1296 + 0.415895
xseB LEPBI_I1861 Exodeoxyribonuclease VII small subunit (Exonuclease VII small subunit)chromosome I CDS1951926 276 + 0.358696