Gene list
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COG category: Replication, recombination and repair
Organism: Leptospira biflexa serovar Patoc strain Patoc 1 (Paris), Patoc 1 (Paris)
Number of genes found: 105
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| Leptospira biflexa serovar Patoc strain Patoc 1 (Paris), Patoc 1 (Paris) | |||||||||
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| Name | Locus tag | Product / Description | UniProt / TrEMBL protein name | Genomic element | Type | Begin | Length | Strand | GC-content |
| NA | LEPBI_I1295 | Putative ATPase involved in DNA replication | SubName: Full=Putative ATPase involved in DNA replication; | chromosome I | CDS | 1349946 | 1260 | + | 0.461111 |
| NA | LEPBI_I1344 | Putative methyltransferase DNA modification enzyme | SubName: Full=Putative methyltransferase DNA modification enzyme; EC=2.1.1.13; | chromosome I | CDS | 1399528 | 1158 | + | 0.38601 |
| NA | LEPBI_I0753 | Putative helicase | SubName: Full=Putative helicase; | chromosome I | CDS | 768582 | 3141 | - | 0.351799 |
| NA | LEPBI_II0248 | Hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome II | CDS | 236564 | 1230 | - | 0.356911 |
| NA | LEPBI_I2175 | Putative ATPase | SubName: Full=Putative ATPase; | chromosome I | CDS | 2261672 | 1464 | + | 0.335383 |
| NA | LEPBI_I2396 | Conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome I | CDS | 2467584 | 513 | - | 0.438596 |
| NA | LEPBI_I2544 | Putative DNA repair helicase | SubName: Full=Putative DNA repair helicase; | chromosome I | CDS | 2632227 | 1698 | - | 0.425206 |
| NA | LEPBI_I1630 | Putative DNA repair protein RecN | RecName: Full=DNA repair protein RecN; AltName: Full=Recombination protein N; | chromosome I | CDS | 1703654 | 1710 | + | 0.438012 |
| NA | LEPBI_II0036 | Putative DNA-binding protein (HU-like protein) | SubName: Full=Putative DNA-binding protein (HU-like protein); | chromosome II | CDS | 35218 | 306 | + | 0.392157 |
| NA | LEPBI_I3056 | Hypothetical protein; putative signal peptide | SubName: Full=Uncharacterized protein; | chromosome I | CDS | 3168393 | 816 | + | 0.447304 |
| NA | LEPBI_I2068 | Conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome I | CDS | 2158091 | 543 | + | 0.412523 |
| NA | LEPBI_I3287 | Conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome I | CDS | 3398694 | 423 | - | 0.330969 |
| NA | LEPBI_I2136 | ATP-dependent RNA helicase | SubName: Full=ATP-dependent RNA helicase; EC=3.6.1.-; | chromosome I | CDS | 2228150 | 1590 | - | 0.433962 |
| NA | LEPBI_I2540 | DNA-binding stress protein, Dps family | SubName: Full=DNA-binding stress protein, Dps family; | chromosome I | CDS | 2628472 | 471 | + | 0.420382 |
| NA | LEPBI_I1665 | Putative ribonuclease H | RecName: Full=Ribonuclease; EC=3.1.26.-; | chromosome I | CDS | 1738756 | 465 | + | 0.43871 |
| NA | LEPBI_I0334 | Putative DNA mismatch repair protein; putative membrane protein | SubName: Full=Putative DNA mismatch repair protein putative membrane protein; | chromosome I | CDS | 334985 | 1542 | - | 0.353437 |
| NA | LEPBI_I3318 | Putative crossover junction endodeoxyribonuclease RuvC (Holliday junction nuclease ruvC) | RecName: Full=Crossover junction endodeoxyribonuclease RuvC; EC=3.1.22.4; AltName: Full=Holliday junction nuclease RuvC; AltName: Full=Holliday junction resolvase RuvC; | chromosome I | CDS | 3431590 | 477 | + | 0.484277 |
| NA | LEPBI_I2275 | Hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome I | CDS | 2343206 | 258 | + | 0.317829 |
| NA | LEPBI_I1379 | Putative helicase | SubName: Full=Putative helicase; | chromosome I | CDS | 1436065 | 1782 | - | 0.398429 |
| NA | LEPBI_I2313 | Conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome I | CDS | 2382637 | 675 | - | 0.367407 |
| NA | LEPBI_I0809 | Conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome I | CDS | 823171 | 297 | + | 0.417508 |
| NA | LEPBI_I1719 | Putative ATP-dependent helicase | SubName: Full=Putative ATP-dependent helicase; EC=3.6.1.-; | chromosome I | CDS | 1790301 | 1986 | + | 0.382679 |
| NA | LEPBI_I1217 | Putative transposase B, catalytic region | SubName: Full=Putative transposase B, catalytic region; | chromosome I | CDS | 1268793 | 621 | + | 0.344605 |
| NA | LEPBI_I2365 | Conserved hypothetical protein; putative signal peptide | SubName: Full=Uncharacterized protein; | chromosome I | CDS | 2436170 | 1680 | - | 0.390476 |
| NA | LEPBI_I3269 | Putative integrase | SubName: Full=Putative integrase; | chromosome I | CDS | 3383010 | 660 | + | 0.418182 |
| NA | LEPBI_I3091 | Transposase, IS30 family | SubName: Full=Transposase, IS30 family; | chromosome I | CDS | 3203654 | 993 | + | 0.35146 |
| NA | LEPBI_I0471 | Putative integrase/recombinase | SubName: Full=Putative integrase/recombinase; | chromosome I | CDS | 465708 | 1287 | - | 0.362859 |
| NA | LEPBI_p0033 | Putative protein with DEAD/DEAH box helicase and with type III restriction enzyme motif | SubName: Full=Uncharacterized protein; | p74 | CDS | 43454 | 4944 | - | 0.408576 |
| NA | LEPBI_I0690 | Putative DNA processing chain A DprA, SMF family | SubName: Full=Putative DNA processing chain A DprA, SMF family; | chromosome I | CDS | 697908 | 927 | + | 0.413161 |
| NA | LEPBI_I0633 | Putative DNA repair photolyase | SubName: Full=Putative DNA repair photolyase; | chromosome I | CDS | 638462 | 999 | - | 0.357357 |
| NA | LEPBI_I2709 | Conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome I | CDS | 2804703 | 3231 | + | 0.421541 |
| NA | LEPBI_I1290 | Putative DNA mismatch repair protein | SubName: Full=Putative DNA mismatch repair protein; | chromosome I | CDS | 1346701 | 276 | + | 0.456522 |
| NA | LEPBI_I1287 | Putative A/G-specific DNA glycosylase | SubName: Full=Putative A/G-specific DNA glycosylase; | chromosome I | CDS | 1342450 | 1062 | + | 0.38983 |
| NA | LEPBI_I0568 | Putative methylated DNA-protein cysteine methyltransferase, C-terminal domain | SubName: Full=Putative methylated DNA-protein cysteine methyltransferase, C-terminal domain; EC=2.1.-.-; | chromosome I | CDS | 568412 | 294 | - | 0.37415 |
| NA | LEPBI_I3182 | Putative DNA repair system specific for alkylated DNA | SubName: Full=Putative DNA repair system specific for alkylated DNA; | chromosome I | CDS | 3294482 | 609 | - | 0.385879 |
| NA | LEPBI_I0533 | Putative methyltransferase | SubName: Full=Putative methyltransferase; EC=2.1.1.-; | chromosome I | CDS | 528999 | 615 | + | 0.38374 |
| NA | LEPBI_I2906 | Conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome I | CDS | 3001360 | 1092 | - | 0.391941 |
| NA | LEPBI_I3468 | Putative hydrolase | SubName: Full=Putative hydrolase; | chromosome I | CDS | 3587477 | 819 | - | 0.373626 |
| NA | LEPBI_I1116 | Putative HNH endonuclease | SubName: Full=Putative HNH endonuclease; | chromosome I | CDS | 1163328 | 294 | - | 0.377551 |
| NA | LEPBI_I0047 | Transposase, IS30 family | SubName: Full=Transposase, IS30 family; | chromosome I | CDS | 45843 | 993 | - | 0.349446 |
| NA | LEPBI_I1792 | Conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome I | CDS | 1870170 | 1077 | + | 0.400186 |
| NA | LEPBI_I2161 | Putative DNA polymerase | SubName: Full=Putative DNA polymerase; EC=2.7.7.7; | chromosome I | CDS | 2249020 | 2664 | + | 0.353979 |
| NA | LEPBI_I0171 | Putative hydrolase | SubName: Full=Putative hydrolase; | chromosome I | CDS | 166221 | 627 | - | 0.432217 |
| NA | LEPBI_II0133 | Putative helicase, ATP-dependent | SubName: Full=Putative helicase, ATP-dependent; EC=3.4.22.44; | chromosome II | CDS | 129774 | 2466 | - | 0.380373 |
| NA | LEPBI_I2847 | Putative ribonuclease H | SubName: Full=Putative ribonuclease H; | chromosome I | CDS | 2938489 | 414 | + | 0.374396 |
| NA | LEPBI_I2170 | Putative nucleoside triphosphate hydrolase | SubName: Full=Putative nucleoside triphosphate hydrolase; | chromosome I | CDS | 2256000 | 1377 | + | 0.318083 |
| NA | LEPBI_I1212 | Hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome I | CDS | 1264442 | 141 | - | 0.397163 |
| NA | LEPBI_I1669 | Conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome I | CDS | 1741523 | 345 | + | 0.373913 |
| NA | LEPBI_I1205 | Putative integrase/recombinase | SubName: Full=Putative integrase/recombinase; | chromosome I | CDS | 1257441 | 897 | - | 0.329989 |
| ada | LEPBI_II0134 | Bifunctional protein: transcriptional regulator of DNA repair/O6-methylguanine-DNA methyltransferase | SubName: Full=Bifunctional protein: transcriptional regulator of DNA repair/O6-methylguanine-DNA methyltransferase; EC=2.1.1.63; | chromosome II | CDS | 132358 | 861 | + | 0.390244 |
| deaD | LEPBI_II0208 | ATP-dependent RNA helicase, DEAD-box family (DeaD) | SubName: Full=ATP-dependent RNA helicase, DEAD-box family (DeaD); | chromosome II | CDS | 209193 | 1605 | + | 0.437383 |
| dinP | LEPBI_II0150 | DNA polymerase IV, devoid of proofreading, damage-inducible protein P | RecName: Full=DNA polymerase IV; Short=Pol IV; EC=2.7.7.7; | chromosome II | CDS | 146635 | 1077 | - | 0.376045 |
| dnaA | LEPBI_I0001 | Chromosomal replication initiator protein DnaA | RecName: Full=Chromosomal replication initiator protein DnaA; | chromosome I | CDS | 141 | 1326 | + | 0.394419 |
| dnaB | LEPBI_I2096 | Replicative DNA helicase | SubName: Full=Replicative DNA helicase; EC=3.6.1.-; | chromosome I | CDS | 2191697 | 1344 | - | 0.438988 |
| dnaC | LEPBI_I0269 | DNA replication protein DnaC | SubName: Full=DNA replication protein DnaC; | chromosome I | CDS | 263176 | 870 | + | 0.426437 |
| dnaE | LEPBI_I2936 | DNA polymerase III alpha subunit | SubName: Full=DNA polymerase III alpha subunit; EC=2.7.7.7; | chromosome I | CDS | 3033408 | 3522 | - | 0.390119 |
| dnaG | LEPBI_I1566 | DNA primase | RecName: Full=DNA primase; EC=2.7.7.-; | chromosome I | CDS | 1632050 | 1812 | + | 0.415011 |
| dnaN | LEPBI_I0002 | DNA polymerase III, beta chain | RecName: Full=DNA polymerase III subunit beta; EC=2.7.7.7; | chromosome I | CDS | 1713 | 1119 | + | 0.364611 |
| dnaX1 | LEPBI_I3461 | DNA polymerase III gamma subunit | SubName: Full=DNA polymerase III gamma subunit; EC=2.7.7.7; | chromosome I | CDS | 3579644 | 1494 | + | 0.366801 |
| dnaX2 | LEPBI_I3479 | DNA polymerase III subunit gamma/tau | SubName: Full=DNA polymerase III subunit gamma/tau; EC=2.7.7.7; | chromosome I | CDS | 3598605 | 933 | + | 0.386924 |
| endA | LEPBI_I1902 | Endonuclease I; putative signal peptide | SubName: Full=Endonuclease I putative signal peptide; EC=3.1.21.1; | chromosome I | CDS | 1994246 | 774 | + | 0.423773 |
| exoA | LEPBI_I1829 | Exodeoxyribonuclease | SubName: Full=Exodeoxyribonuclease; EC=3.1.11.2; | chromosome I | CDS | 1918120 | 771 | + | 0.411154 |
| gyrA1 | LEPBI_I0006 | DNA gyrase subunit A | RecName: Full=DNA gyrase subunit A; EC=5.99.1.3; | chromosome I | CDS | 6272 | 2532 | + | 0.401659 |
| gyrA2 | LEPBI_I0679 | DNA gyrase/topoisomerase, type IV, subunit A | SubName: Full=DNA gyrase/topoisomerase, type IV, subunit A; EC=5.99.1.3; | chromosome I | CDS | 684784 | 1386 | + | 0.391053 |
| gyrB1 | LEPBI_I0005 | DNA gyrase subunit B | RecName: Full=DNA gyrase subunit B; EC=5.99.1.3; | chromosome I | CDS | 4333 | 1920 | + | 0.405729 |
| gyrB2 | LEPBI_I0680 | DNA gyrase/topoisomerase, type IIa, subunit B | SubName: Full=DNA gyrase/topoisomerase, type IIa, subunit B; EC=5.99.1.3; | chromosome I | CDS | 686176 | 2127 | + | 0.406676 |
| hepA | LEPBI_I3440 | ATP-dependent RNA helicase | SubName: Full=ATP-dependent RNA helicase; | chromosome I | CDS | 3559378 | 2847 | + | 0.361433 |
| ligA | LEPBI_I0217 | DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) | RecName: Full=DNA ligase; EC=6.5.1.2; AltName: Full=Polydeoxyribonucleotide synthase [NAD(+)]; | chromosome I | CDS | 207283 | 2016 | - | 0.402778 |
| mfd | LEPBI_I1823 | Transcription-repair coupling factor (TRCF; ATP-dependent helicase Mfd) | RecName: Full=Transcription-repair-coupling factor; Short=TRCF; EC=3.6.4.-; | chromosome I | CDS | 1906326 | 3423 | - | 0.378907 |
| mutL | LEPBI_I2151 | DNA mismatch repair protein MutL | RecName: Full=DNA mismatch repair protein MutL; | chromosome I | CDS | 2239591 | 1845 | - | 0.463415 |
| mutS | LEPBI_I0833 | DNA mismatch repair protein MutS | SubName: Full=DNA mismatch repair protein MutS; | chromosome I | CDS | 845632 | 2502 | - | 0.382894 |
| nth | LEPBI_I1021 | Endonuclease III (DNA-(apurinic or apyrimidinic site) lyase) | RecName: Full=Endonuclease III; EC=4.2.99.18; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase; | chromosome I | CDS | 1064891 | 642 | + | 0.461059 |
| nudH | LEPBI_I3326 | (Di)nucleoside polyphosphate hydrolase, Nudix hydrolase family (Invasion protein A) | SubName: Full=(Di)nucleoside polyphosphate hydrolase, Nudix hydrolase family (Invasion protein A); EC=3.6.1.-; | chromosome I | CDS | 3437132 | 519 | + | 0.373796 |
| pcrA1 | LEPBI_I1634 | ATP-dependent DNA helicase PcrA | SubName: Full=ATP-dependent DNA helicase PcrA; EC=3.6.1.-; | chromosome I | CDS | 1709375 | 2184 | + | 0.36859 |
| pcrA2 | LEPBI_I2378 | ATP-dependent DNA helicase PcrA | SubName: Full=ATP-dependent DNA helicase PcrA; EC=3.6.1.-; | chromosome I | CDS | 2450345 | 1284 | + | 0.367601 |
| pcrA3 | LEPBI_I1736 | ATP-dependent DNA helicase PcrA | SubName: Full=ATP-dependent DNA helicase PcrA; EC=3.6.1.-; | chromosome I | CDS | 1810808 | 1995 | + | 0.368421 |
| pcrA4 | LEPBI_I2066 | ATP-dependent DNA helicase PcrA | SubName: Full=ATP-dependent DNA helicase PcrA; EC=3.6.1.-; | chromosome I | CDS | 2155278 | 2037 | - | 0.442808 |
| phr | LEPBI_I2409 | Deoxyribodipyrimidine photolyase (DNA photolyase; Photoreactivating enzyme) | SubName: Full=Deoxyribodipyrimidine photolyase (DNA photolyase Photoreactivating enzyme); EC=4.1.99.3; | chromosome I | CDS | 2481168 | 1491 | + | 0.373575 |
| polA | LEPBI_I0674 | DNA polymerase I (POL I) | SubName: Full=DNA polymerase I (POL I); EC=2.7.7.7; | chromosome I | CDS | 677667 | 2829 | - | 0.376458 |
| priA | LEPBI_I1656 | Primosomal protein N' (Replication factor Y) | SubName: Full=Primosomal protein N (Replication factor Y); | chromosome I | CDS | 1731724 | 1953 | + | 0.409626 |
| recA | LEPBI_I2446 | Protein RecA (Recombinase A) | RecName: Full=Protein RecA; AltName: Full=Recombinase A; | chromosome I | CDS | 2520970 | 1164 | + | 0.454467 |
| recB | LEPBI_p0020 | Exodeoxyribonuclease V beta chain, UvrD subfamily | SubName: Full=Exodeoxyribonuclease V beta chain, UvrD subfamily; | p74 | CDS | 18773 | 3630 | - | 0.371625 |
| recC | LEPBI_p0021 | Exodeoxyribonuclease V gamma chain | SubName: Full=Exodeoxyribonuclease V gamma chain; EC=3.1.11.5; | p74 | CDS | 22399 | 3204 | - | 0.356429 |
| recD | LEPBI_p0019 | ATP-dependent exoDNAse (exonuclease V), alpha subunit, helicase superfamily I member | SubName: Full=ATP-dependent exoDNAse (Exonuclease V), alpha subunit, helicase superfamily I member; EC=3.1.11.5; | p74 | CDS | 16974 | 1803 | - | 0.374931 |
| recF | LEPBI_I0003 | DNA replication and repair protein RecF | RecName: Full=DNA replication and repair protein RecF; | chromosome I | CDS | 2831 | 1104 | + | 0.356884 |
| recG | LEPBI_I0349 | ATP-dependent DNA helicase RecG | SubName: Full=ATP-dependent DNA helicase RecG; EC=3.6.1.-; | chromosome I | CDS | 347933 | 2061 | + | 0.388646 |
| recJ | LEPBI_I1309 | Single-stranded-DNA-specific exonuclease RecJ | SubName: Full=Single-stranded-DNA-specific exonuclease RecJ; EC=3.1.-.-; | chromosome I | CDS | 1363581 | 1989 | - | 0.409251 |
| recO | LEPBI_I2091 | DNA repair protein RecO (Recombination protein O) | RecName: Full=DNA repair protein RecO; AltName: Full=Recombination protein O; | chromosome I | CDS | 2185296 | 750 | - | 0.392 |
| recQ1 | LEPBI_I0309 | ATP-dependent DNA helicase RecQ | SubName: Full=ATP-dependent DNA helicase RecQ; EC=3.6.1.-; | chromosome I | CDS | 306964 | 1857 | - | 0.430802 |
| recQ2 | LEPBI_I2503 | ATP-dependent DNA helicase RecQ | SubName: Full=ATP-dependent DNA helicase RecQ; EC=3.6.1.-; | chromosome I | CDS | 2587224 | 1446 | - | 0.377593 |
| recR | LEPBI_I3463 | Recombination protein RecR | RecName: Full=Recombination protein RecR; | chromosome I | CDS | 3581501 | 609 | + | 0.377668 |
| rhlE | LEPBI_I2827 | ATP-dependent RNA helicase RhlE | SubName: Full=ATP-dependent RNA helicase RhlE; | chromosome I | CDS | 2919379 | 1416 | - | 0.410311 |
| ruvA | LEPBI_I1501 | Holliday junction DNA helicase RuvA | RecName: Full=Holliday junction ATP-dependent DNA helicase RuvA; EC=3.6.4.12; | chromosome I | CDS | 1561155 | 600 | - | 0.391667 |
| ruvB | LEPBI_I0524 | Holliday junction DNA helicase RuvB | RecName: Full=Holliday junction ATP-dependent DNA helicase RuvB; EC=3.6.4.12; | chromosome I | CDS | 522943 | 1026 | + | 0.489279 |
| ssbA | LEPBI_I2099 | Single-stranded DNA binding protein (SSB; Helix-destabilizing protein) | RecName: Full=Single-stranded DNA-binding protein; | chromosome I | CDS | 2193874 | 444 | - | 0.439189 |
| ssbB | LEPBI_I2975 | Single-strand binding protein (SSB; Helix-destabilizing protein) | RecName: Full=Single-stranded DNA-binding protein; | chromosome I | CDS | 3078420 | 354 | - | 0.39548 |
| topA | LEPBI_I1163 | DNA topoisomerase I | SubName: Full=DNA topoisomerase I; EC=5.99.1.2; | chromosome I | CDS | 1210111 | 1878 | + | 0.355698 |
| ung | LEPBI_I0821 | Uracil-DNA glycosylase (UDG) | RecName: Full=Uracil-DNA glycosylase; Short=UDG; EC=3.2.2.27; | chromosome I | CDS | 834571 | 657 | - | 0.374429 |
| uvrA | LEPBI_I1837 | UvrABC system protein A (UvrA protein; Excinuclease ABC subunit A) | RecName: Full=UvrABC system protein A; Short=UvrA protein; AltName: Full=Excinuclease ABC subunit A; | chromosome I | CDS | 1925901 | 2865 | - | 0.431414 |
| uvrB | LEPBI_I0845 | UvrABC system protein B (UvrB protein; Excinuclease ABC subunit B) | RecName: Full=UvrABC system protein B; Short=Protein UvrB; AltName: Full=Excinuclease ABC subunit B; | chromosome I | CDS | 857245 | 1995 | + | 0.390476 |
| uvrC | LEPBI_I2076 | UvrABC system protein C (UvrC protein; Excinuclease ABC subunit C) | RecName: Full=UvrABC system protein C; Short=Protein UvrC; AltName: Full=Excinuclease ABC subunit C; | chromosome I | CDS | 2168050 | 1845 | - | 0.404336 |
| xerC | LEPBI_I2445 | Tyrosine recombinase XerC | RecName: Full=Tyrosine recombinase XerC; | chromosome I | CDS | 2519737 | 936 | - | 0.382479 |
| xerD | LEPBI_I2357 | Tyrosine recombinase xerD | RecName: Full=Tyrosine recombinase XerD; | chromosome I | CDS | 2426704 | 909 | - | 0.382838 |
| xseA | LEPBI_I1860 | Exodeoxyribonuclease VII large subunit (Exonuclease VII large subunit) | RecName: Full=Exodeoxyribonuclease 7 large subunit; EC=3.1.11.6; AltName: Full=Exodeoxyribonuclease VII large subunit; | chromosome I | CDS | 1950641 | 1296 | + | 0.415895 |
| xseB | LEPBI_I1861 | Exodeoxyribonuclease VII small subunit (Exonuclease VII small subunit) | RecName: Full=Exodeoxyribonuclease 7 small subunit; EC=3.1.11.6; AltName: Full=Exodeoxyribonuclease VII small subunit; | chromosome I | CDS | 1951926 | 276 | + | 0.358696 |
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