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2024-05-11 14:15:48

Gene list

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COG category: Replication, recombination and repair
Organism: Treponema pallidum subsp. pallidum SS14, SS14

Number of genes found: 62

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Treponema pallidum subsp. pallidum SS14, SS14
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA TPASS_0770 ATP-dependent RNA helicasechromosome CDS837426 1950 + 0.535385
NA TPASS_0229 DNA polymerase, bacteriophage-typechromosome CDS238584 834 + 0.555156
NA TPASS_0636 hypothetical proteinchromosome CDS696341 771 - 0.511025
NA TPASS_0979 hypothetical proteinchromosome CDS1063686 774 + 0.516796
NA TPASS_0408 hypothetical proteinchromosome CDS432893 3255 + 0.503533
NA TPASS_0521 possible DNA polymerase III, gamma and tau subunitschromosome CDS563168 1272 - 0.496069
NA TPASS_0380 possible DNA repair helicasechromosome CDS406441 1821 - 0.548051
NA TPASS_0710 hypothetical proteinchromosome CDS778133 1971 + 0.523085
NA TPASS_0343 possible A/G-specific adenine glycosylasechromosome CDS366801 834 + 0.495204
NA TPASS_0251 DNA-binding protein IIchromosome CDS264112 318 + 0.54717
NA TPASS_1029 hypothetical proteinchromosome CDS1124569 687 - 0.612809
NA TPASS_0913 hypothetical proteinchromosome CDS992940 381 + 0.488189
NA TPASS_0731 hypothetical proteinchromosome CDS798122 711 + 0.589311
NA TPASS_0065 hypothetical proteinchromosome CDS71773 588 + 0.498299
NA TPASS_0994 hypothetical proteinchromosome CDS1080061 810 + 0.546914
NA TPASS_0899 hypothetical proteinchromosome CDS980991 588 - 0.537415
NA TPASS_0103 possible ATP-dependent DNA helicasechromosome CDS111785 1824 + 0.527412
NA TPASS_0014 hypothetical proteinchromosome CDS13164 609 + 0.489327
NA TPASS_0626 possible exonucleasechromosome CDS682455 1176 + 0.491497
NA TPASS_0588 hypothetical proteinchromosome CDS641303 765 - 0.482353
NA TPASS_0898 possible ATP-dependent nuclease, subunit Achromosome CDS977275 3720 - 0.580376
codV TPASS_0391 integrase/recombinasechromosome CDS417184 921 + 0.5038
dam TPASS_0810 DNA adenine methyltransferasechromosome CDS880108 912 + 0.550439
dat TPASS_0141 methylated-DNA-protein-cysteineS-methyltransferasechromosome CDS163092 534 + 0.559925
dnaA TPASS_0001 chromosomal replication initiation protein DnaAchromosome CDS4 1395 + 0.407168
dnaB TPASS_0058 replicative DNA helicase DnaBchromosome CDS67637 1317 - 0.529992
dnaE TPASS_0669 DNA polymerase III, subunit alphachromosome CDS732056 3513 - 0.44378
dnaG TPASS_0492 DNA primasechromosome CDS527509 1818 + 0.511001
dnaN TPASS_0002 DNA-directed DNA polymerase beta subunitchromosome CDS1641 1116 + 0.413082
dnaQ TPASS_0643 DNA polymerase III, subunit epsilonchromosome CDS706253 648 + 0.466049
dnaZX TPASS_1005 DNA polymerase III, subunits gamma and tauchromosome CDS1094677 1719 - 0.504363
exoA TPASS_0125 exodeoxyribonucleasechromosome CDS146751 795 + 0.566038
gyrA TPASS_0005 DNA topoisomerase (ATP-hydrolyzing) subunit Achromosome CDS4391 2442 + 0.47502
gyrB TPASS_1006 DNA gyrase, subunit Bchromosome CDS1096454 1914 - 0.483804
hrpA TPASS_0526 ATP-dependent helicasechromosome CDS569576 2007 + 0.494768
lig TPASS_0634 DNA ligasechromosome CDS693835 2472 + 0.511731
mutL TPASS_0303 DNA mismatch repair protein MutLchromosome CDS317150 1947 - 0.575244
mutS TPASS_0328 DNA mismatch repair protein MutSchromosome CDS348648 2703 + 0.540881
nth TPASS_0775 endonuclease IIIchromosome CDS844340 636 + 0.551887
polA TPASS_0105 DNA polymerase Ichromosome CDS115803 2994 + 0.447562
priA TPASS_0230 primosomal protein Nchromosome CDS239422 1974 + 0.563323
recA TPASS_0692 protein RecAchromosome CDS760177 1224 - 0.510621
recF TPASS_0003 recombination protein RecFchromosome CDS2623 1212 + 0.435644
recG TPASS_0687 DNA recombinasechromosome CDS754269 2061 - 0.425036
recJ TPASS_0704 single-stranded-DNA-specific exonucleasechromosome CDS770018 2121 - 0.532296
recN TPASS_0442 DNA repair proteinchromosome CDS469389 1722 + 0.551103
recR TPASS_1004 recombination protein RecRchromosome CDS1093998 606 - 0.559406
rep TPASS_0102 Rep helicase, single-stranded DNA-dependent ATPasechromosome CDS109747 1974 - 0.450861
rnhA TPASS_0353 ribonuclease Hchromosome CDS378378 510 - 0.6
ruvA TPASS_0543 Holliday junction DNA helicase, subunit Achromosome CDS586358 684 - 0.520468
ruvB TPASS_0162 Holliday junction DNA helicase, subunit Bchromosome CDS184567 1053 - 0.585945
ruvC TPASS_0517 Holliday junction nuclease, subunit Cchromosome CDS559336 591 - 0.468697
sbcC TPASS_0627 exonucleasechromosome CDS683627 3144 + 0.465649
smf TPASS_0393 protein Smfchromosome CDS418843 909 + 0.49725
ssb TPASS_0062 single-strand DNA binding protein Ssbchromosome CDS70162 531 - 0.538606
topA TPASS_0394 DNA topoisomerase Ichromosome CDS419784 2196 + 0.478597
trcF TPASS_0344 transcription-repair coupling factorchromosome CDS367639 3423 - 0.49664
uvrA TPASS_0514 excinuclease ABC, subunit Achromosome CDS551891 2883 + 0.473118
uvrB TPASS_0116 excinuclease ABC, subunit Bchromosome CDS132860 2007 + 0.453413
uvrC TPASS_0472 excinuclease ABC, subunit Cchromosome CDS501109 2076 - 0.507225
uvrD TPASS_1028 DNA helicase IIchromosome CDS1122474 2013 - 0.5539
xprB TPASS_0395 integrase/recombinasechromosome CDS421972 894 + 0.517897