SGB - The Spirochetes Genome Browser - Gene list

Title

+ Borrelia afzelii, PKo

+ Borrelia burgdorferi ZS7, ZS7

+ Borrelia burgdorferi, B31

+ Borrelia duttonii Ly, Ly

+ Borrelia garinii High passage (300), PBi

+ Borrelia garinii, PBi

+ Borrelia hermsii DAH, DAH

+ Borrelia recurrentis A1, A1

+ Borrelia turicatae 91E135, 91E135

+ Leptospira biflexa serovar Patoc strain Patoc 1 (Ames), Patoc 1 (Ames)

+ Leptospira biflexa serovar Patoc strain Patoc 1 (Paris), Patoc 1 (Paris)

+ Leptospira borgpetersenii serovar Hardjo-bovis JB197, JB197

+ Leptospira borgpetersenii serovar Hardjo-bovis L550, L550

+ Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130

+ Leptospira interrogans serovar lai str. 56601

+ Treponema denticola ATCC 35405

+ Treponema pallidum

+ Treponema pallidum subsp. pallidum SS14, SS14

+ COG functional categories

+ (Clickable) linear whole genome views

+ Horizontal gene transfer (predicted by SIGI-HMM)

+ Sequence retrieval

+ Advanced search

+ Sequence similarity search

+ Best bidirectional hits (protein-based analysis)

+ Gene core sets (protein-based analysis)

+ Gene partnerships (DNA-based analysis)

+ Protein variations (protein-based analysis)

+ Synteny analysis (protein-based analysis)

+ Gene conservation (protein-based analysis)

+ Codon and amino acid usages (DNA- and protein-based analysis)

+ Alignments of whole reference and target genomic elements (DNA-based analysis)

Gene list

Applied filters:

COG category: NOT ANALYZED
Genomic element: pl53

Number of genes found: 27

Free access


Show UniProt / TrEMBL protein name		View in Fasta format (DNA)		View in Fasta format (Protein)

Borrelia recurrentis A1, A1

Name	Locus tag	Product / Description	Genomic element	Type	Begin	Length	Strand	GC-content
NA	BRE_2050		pl53	pseudo	45479	777	+	0.366795
NA	BRE_2032		pl53	pseudo	26599	662	+	0.392749
NA	BRE_2047		pl53	pseudo	41885	931	+	0.392052
NA	BRE_2052		pl53	pseudo	47444	1043	+	0.395014
NA	BRE_2028		pl53	pseudo	21886	615	-	0.265041
NA	BRE_2055		pl53	pseudo	50358	1048	+	0.39313
NA	BRE_2023		pl53	pseudo	18620	472	+	0.239407
NA	BRE_2018		pl53	pseudo	14514	631	-	0.255151
NA	BRE_2035		pl53	pseudo	28101	387	-	0.374677
NA	BRE_2001		pl53	pseudo	215	207	-	0.362319
NA	BRE_2053		pl53	pseudo	48697	186	+	0.365591
NA	BRE_2003		pl53	pseudo	1831	712	-	0.282303
NA	BRE_2039		pl53	pseudo	33138	529	-	0.217391
NA	BRE_2033		pl53	pseudo	27260	305	-	0.373771
NA	BRE_2011		pl53	pseudo	9168	305	+	0.373771
NA	BRE_2024		pl53	pseudo	19257	281	+	0.30605
NA	BRE_2025		pl53	pseudo	19564	336	+	0.255952
NA	BRE_2012		pl53	pseudo	9507	623	-	0.390048
NA	BRE_2004		pl53	pseudo	3049	452	+	0.212389
NA	BRE_2016		pl53	pseudo	13162	565	+	0.251327
NA	BRE_2029		pl53	pseudo	23236	947	+	0.278775
NA	BRE_2014		pl53	pseudo	11015	1361	-	0.265246
NA	BRE_2031		pl53	pseudo	25178	1079	+	0.39481
NA	BRE_2054		pl53	pseudo	49259	735	+	0.370068
NA	BRE_2051		pl53	pseudo	46460	832	+	0.355769
NA	BRE_2034		pl53	pseudo	27908	649	-	0.368259
bppC_1	BRE_2017		pl53	pseudo	14305	234	+	0.222222