SGB - The Spirochetes Genome Browser - Gene list

Title

+ Borrelia afzelii, PKo

+ Borrelia burgdorferi ZS7, ZS7

+ Borrelia burgdorferi, B31

+ Borrelia duttonii Ly, Ly

+ Borrelia garinii High passage (300), PBi

+ Borrelia garinii, PBi

+ Borrelia hermsii DAH, DAH

+ Borrelia recurrentis A1, A1

+ Borrelia turicatae 91E135, 91E135

+ Leptospira biflexa serovar Patoc strain Patoc 1 (Ames), Patoc 1 (Ames)

+ Leptospira biflexa serovar Patoc strain Patoc 1 (Paris), Patoc 1 (Paris)

+ Leptospira borgpetersenii serovar Hardjo-bovis JB197, JB197

+ Leptospira borgpetersenii serovar Hardjo-bovis L550, L550

+ Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130

+ Leptospira interrogans serovar lai str. 56601

+ Treponema denticola ATCC 35405

+ Treponema pallidum

+ Treponema pallidum subsp. pallidum SS14, SS14

+ COG functional categories

+ (Clickable) linear whole genome views

+ Horizontal gene transfer (predicted by SIGI-HMM)

+ Sequence retrieval

+ Advanced search

+ Sequence similarity search

+ Best bidirectional hits (protein-based analysis)

+ Gene core sets (protein-based analysis)

+ Gene partnerships (DNA-based analysis)

+ Protein variations (protein-based analysis)

+ Synteny analysis (protein-based analysis)

+ Gene conservation (protein-based analysis)

+ Codon and amino acid usages (DNA- and protein-based analysis)

+ Alignments of whole reference and target genomic elements (DNA-based analysis)

Gene list

Applied filters:

COG category: Function unknown
Genomic element: chromosome II

Number of genes found: 17

Free access


Show UniProt / TrEMBL protein name		View in Fasta format (DNA)		View in Fasta format (Protein)

Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130

Name	Locus tag	Product / Description	Genomic element	Type	Begin	Length	Strand	GC-content
NA	LIC20135	ferredoxin	chromosome II	CDS	157700	1170	-	0.34188
NA	LIC20156	conserved hypothetical protein	chromosome II	CDS	189000	306	-	0.352941
NA	LIC20114	LipL45 homologue	chromosome II	CDS	136489	1092	-	0.358059
NA	LIC20205	hypothetical protein	chromosome II	CDS	263228	870	-	0.387356
NA	LIC20032	conserved hypothetical protein	chromosome II	CDS	31068	423	+	0.375887
NA	LIC20055	hypothetical protein	chromosome II	CDS	58042	876	-	0.373288
NA	LIC20233	cytoplasmic membrane protein	chromosome II	CDS	296538	495	-	0.327273
NA	LIC20173	conserved hypothetical protein	chromosome II	CDS	209755	1392	+	0.346983
NA	LIC20123	conserved hypothetical protein	chromosome II	CDS	146796	684	-	0.361111
NA	LIC20219	conserved hypothetical protein	chromosome II	CDS	280058	795	+	0.338365
NA	LIC20035	conserved hypothetical protein	chromosome II	CDS	34573	1323	+	0.377173
NA	LIC20234	cytoplasmic membrane protein	chromosome II	CDS	297462	459	-	0.363834
NA	LIC20023	intercellular adhesion protein C	chromosome II	CDS	23764	1164	-	0.328179
NA	LIC20154	lipoprotein	chromosome II	CDS	187071	726	+	0.319559
NA	LIC20206	cytoplasmic membrane protein	chromosome II	CDS	264160	627	-	0.360447
ard	LIC20227	acireductone dioxygenase enzymes ARD and ARD'	chromosome II	CDS	288819	534	-	0.378277
traB	LIC20102	pheromone shutdown protein	chromosome II	CDS	118019	1227	+	0.370008