SGB - The Spirochetes Genome Browser - Gene list

Title

+ Borrelia afzelii, PKo

+ Borrelia burgdorferi ZS7, ZS7

+ Borrelia burgdorferi, B31

+ Borrelia duttonii Ly, Ly

+ Borrelia garinii High passage (300), PBi

+ Borrelia garinii, PBi

+ Borrelia hermsii DAH, DAH

+ Borrelia recurrentis A1, A1

+ Borrelia turicatae 91E135, 91E135

+ Leptospira biflexa serovar Patoc strain Patoc 1 (Ames), Patoc 1 (Ames)

+ Leptospira biflexa serovar Patoc strain Patoc 1 (Paris), Patoc 1 (Paris)

+ Leptospira borgpetersenii serovar Hardjo-bovis JB197, JB197

+ Leptospira borgpetersenii serovar Hardjo-bovis L550, L550

+ Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130

+ Leptospira interrogans serovar lai str. 56601

+ Treponema denticola ATCC 35405

+ Treponema pallidum

+ Treponema pallidum subsp. pallidum SS14, SS14

+ COG functional categories

+ (Clickable) linear whole genome views

+ Horizontal gene transfer (predicted by SIGI-HMM)

+ Sequence retrieval

+ Advanced search

+ Sequence similarity search

+ Best bidirectional hits (protein-based analysis)

+ Gene core sets (protein-based analysis)

+ Gene partnerships (DNA-based analysis)

+ Protein variations (protein-based analysis)

+ Synteny analysis (protein-based analysis)

+ Gene conservation (protein-based analysis)

+ Codon and amino acid usages (DNA- and protein-based analysis)

+ Alignments of whole reference and target genomic elements (DNA-based analysis)

Gene list

Applied filters:

COG category: Defense mechanisms
Organism: Treponema pallidum subsp. pallidum SS14, SS14

Number of genes found: 7

Free access


Show UniProt / TrEMBL protein name		View in Fasta format (DNA)		View in Fasta format (Protein)

Treponema pallidum subsp. pallidum SS14, SS14

Name	Locus tag	Product / Description	Genomic element	Type	Begin	Length	Strand	GC-content
NA	TPASS_0962	hypothetical integral membrane protein	chromosome	CDS	1044718	1233	-	0.507705
NA	TPASS_0581	ABC transporter, ATP-binding protein	chromosome	CDS	633036	681	+	0.46696
NA	TPASS_0963	hypothetical integral membrane protein	chromosome	CDS	1046061	1230	-	0.523577
NA	TPASS_0806	possible protein FemA	chromosome	CDS	877206	1497	-	0.556446
NA	TPASS_0901	hypothetical integral membrane protein	chromosome	CDS	983989	1413	-	0.513093
NA	TPASS_0964	ABC transporter, ATP-binding protein	chromosome	CDS	1047280	708	-	0.548023
mccF	TPASS_0688	immunity protein	chromosome	CDS	756385	1014	-	0.389546