SGB - The Spirochetes Genome Browser - Gene list

Title

+ Borrelia afzelii, PKo

+ Borrelia burgdorferi ZS7, ZS7

+ Borrelia burgdorferi, B31

+ Borrelia duttonii Ly, Ly

+ Borrelia garinii High passage (300), PBi

+ Borrelia garinii, PBi

+ Borrelia hermsii DAH, DAH

+ Borrelia recurrentis A1, A1

+ Borrelia turicatae 91E135, 91E135

+ Leptospira biflexa serovar Patoc strain Patoc 1 (Ames), Patoc 1 (Ames)

+ Leptospira biflexa serovar Patoc strain Patoc 1 (Paris), Patoc 1 (Paris)

+ Leptospira borgpetersenii serovar Hardjo-bovis JB197, JB197

+ Leptospira borgpetersenii serovar Hardjo-bovis L550, L550

+ Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130

+ Leptospira interrogans serovar lai str. 56601

+ Treponema denticola ATCC 35405

+ Treponema pallidum

+ Treponema pallidum subsp. pallidum SS14, SS14

+ COG functional categories

+ (Clickable) linear whole genome views

+ Horizontal gene transfer (predicted by SIGI-HMM)

+ Sequence retrieval

+ Advanced search

+ Sequence similarity search

+ Best bidirectional hits (protein-based analysis)

+ Gene core sets (protein-based analysis)

+ Gene partnerships (DNA-based analysis)

+ Protein variations (protein-based analysis)

+ Synteny analysis (protein-based analysis)

+ Gene conservation (protein-based analysis)

+ Codon and amino acid usages (DNA- and protein-based analysis)

+ Alignments of whole reference and target genomic elements (DNA-based analysis)

Gene list

Applied filters:

COG category: Cytoskeleton

Number of genes found: 8

Free access


Show UniProt / TrEMBL protein name		View in Fasta format (DNA)		View in Fasta format (Protein)

Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130

Name	Locus tag	Product / Description	Genomic element	Type	Begin	Length	Strand	GC-content
NA	LIC13121	conserved hypothetical protein	chromosome I	CDS	3820390	873	-	0.332188
NA	LIC11467	regulator of chromosome condensation	chromosome I	CDS	1811649	1497	-	0.414162

Leptospira interrogans serovar lai str. 56601
Name	Locus tag	Product / Description	Genomic element	Type	Begin	Length	Strand	GC-content
NA		Regulator of chromosome condensation RCC1 family protein	chromosome I	CDS	2471713	1521	+	0.408941
NA		hypothetical protein	chromosome I	CDS	3878000	873	-	0.334479
NA		hypothetical protein	chromosome I	CDS	3145576	108	+	0.314815

Treponema denticola ATCC 35405
Name	Locus tag	Product / Description	Genomic element	Type	Begin	Length	Strand	GC-content
NA	TDE0910	conserved hypothetical protein	chromosome	CDS	928914	1713	+	0.272037
NA	TDE1691	conserved hypothetical protein	chromosome	CDS	1747497	867	-	0.344867
NA	TDE0403	conserved hypothetical protein	chromosome	CDS	454573	855	+	0.349708