SGB - The Spirochetes Genome Browser - Summary for Treponema pallidum.

Title

+ Borrelia afzelii, PKo

+ Borrelia burgdorferi ZS7, ZS7

+ Borrelia burgdorferi, B31

+ Borrelia duttonii Ly, Ly

+ Borrelia garinii High passage (300), PBi

+ Borrelia garinii, PBi

+ Borrelia hermsii DAH, DAH

+ Borrelia recurrentis A1, A1

+ Borrelia turicatae 91E135, 91E135

+ Leptospira biflexa serovar Patoc strain Patoc 1 (Ames), Patoc 1 (Ames)

+ Leptospira biflexa serovar Patoc strain Patoc 1 (Paris), Patoc 1 (Paris)

+ Leptospira borgpetersenii serovar Hardjo-bovis JB197, JB197

+ Leptospira borgpetersenii serovar Hardjo-bovis L550, L550

+ Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130

+ Leptospira interrogans serovar lai str. 56601

+ Treponema denticola ATCC 35405

+ Treponema pallidum

+ Treponema pallidum subsp. pallidum SS14, SS14

+ COG functional categories

+ (Clickable) linear whole genome views

+ Horizontal gene transfer (predicted by SIGI-HMM)

+ Sequence retrieval

+ Advanced search

+ Sequence similarity search

+ Best bidirectional hits (protein-based analysis)

+ Gene core sets (protein-based analysis)

+ Gene partnerships (DNA-based analysis)

+ Protein variations (protein-based analysis)

+ Synteny analysis (protein-based analysis)

+ Gene conservation (protein-based analysis)

+ Codon and amino acid usages (DNA- and protein-based analysis)

+ Alignments of whole reference and target genomic elements (DNA-based analysis)

Summary for Treponema pallidum.

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chr: chromosome(s), pl: plasmid(s), seg: segment(s)

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	Treponema pallidum
Genomic elements	1 chromosomes(s) Show details
Genome features	CDS: 1031 genes, length ø 1023 bp, gc-content ø 0.528 '+'-strand: 552 genes, length ø 1016 bp, gc-content ø 0.528 '-'-strand: 479 genes, length ø 1031 bp, gc-content ø 0.529 rRNA: 6 genes, length ø 1494 bp, gc-content ø 0.522 '+'-strand: 6 genes, length ø 1494 bp, gc-content ø 0.522 '-'-strand: 0 genes, length ø 0 bp, gc-content ø 0 tRNA: 45 genes, length ø 75 bp, gc-content ø 0.571 '+'-strand: 26 genes, length ø 74 bp, gc-content ø 0.559 '-'-strand: 19 genes, length ø 77 bp, gc-content ø 0.588
COG categories
Amino acid transport and metabolism [E]	34
Carbohydrate transport and metabolism [G]	45
Cell cycle control, mitosis and meiosis [D]	19
Cell motility [N]	50
Cell wall/membrane biogenesis [M]	68
Chromatin structure and dynamics [B]	0
Coenzyme transport and metabolism [H]	23
Cytoskeleton [Z]	0
Defense mechanisms [V]	7
Energy production and conversion [C]	45
Extracellular structures [W]	0
Function unknown [S]	54
General function prediction only [R]	113
Inorganic ion transport and metabolism [P]	29
Intracellular trafficking and secretion [U]	27
Lipid transport and metabolism [I]	19
NOT ANALYZED	51
Nuclear structure [Y]	0
Nucleotide transport and metabolism [F]	24
Posttranslational modification, protein turnover, chaperones [O]	46
RNA processing and modification [A]	0
Replication, recombination and repair [L]	62
Secondary metabolites biosynthesis, transport and catabolism [Q]	4
Signal transduction mechanisms [T]	40
Transcription [K]	34
Translation, ribosomal structure and biogenesis [J]	121
Unclassified [-]	242