Treponema pallidum | |
---|---|
Genomic elements | 1 chromosomes(s) Hide details chromosome length: 1138011 bp gc-content (intragenic): 0.530579 % CDS: 1031 genes, length ø 1023 bp, gc-content ø 0.528 '+'-strand: 552 genes, length ø 1016 bp, gc-content ø 0.528 '-'-strand: 479 genes, length ø 1031 bp, gc-content ø 0.529 rRNA: 6 genes, length ø 1494 bp, gc-content ø 0.522 '+'-strand: 6 genes, length ø 1494 bp, gc-content ø 0.522 '-'-strand: 0 genes, length ø 0 bp, gc-content ø 0 Confidence [min/max/avg]: // Coverage [min/max/avg]: // tRNA: 45 genes, length ø 75 bp, gc-content ø 0.571 '+'-strand: 26 genes, length ø 74 bp, gc-content ø 0.559 '-'-strand: 19 genes, length ø 77 bp, gc-content ø 0.588 |
Genome features | CDS: 1031 genes, length ø 1023 bp, gc-content ø 0.528 '+'-strand: 552 genes, length ø 1016 bp, gc-content ø 0.528 '-'-strand: 479 genes, length ø 1031 bp, gc-content ø 0.529 rRNA: 6 genes, length ø 1494 bp, gc-content ø 0.522 '+'-strand: 6 genes, length ø 1494 bp, gc-content ø 0.522 '-'-strand: 0 genes, length ø 0 bp, gc-content ø 0 tRNA: 45 genes, length ø 75 bp, gc-content ø 0.571 '+'-strand: 26 genes, length ø 74 bp, gc-content ø 0.559 '-'-strand: 19 genes, length ø 77 bp, gc-content ø 0.588 |
COG categories | |
Amino acid transport and metabolism [E] | 34 |
Carbohydrate transport and metabolism [G] | 45 |
Cell cycle control, mitosis and meiosis [D] | 19 |
Cell motility [N] | 50 |
Cell wall/membrane biogenesis [M] | 68 |
Chromatin structure and dynamics [B] | 0 |
Coenzyme transport and metabolism [H] | 23 |
Cytoskeleton [Z] | 0 |
Defense mechanisms [V] | 7 |
Energy production and conversion [C] | 45 |
Extracellular structures [W] | 0 |
Function unknown [S] | 54 |
General function prediction only [R] | 113 |
Inorganic ion transport and metabolism [P] | 29 |
Intracellular trafficking and secretion [U] | 27 |
Lipid transport and metabolism [I] | 19 |
NOT ANALYZED | 51 |
Nuclear structure [Y] | 0 |
Nucleotide transport and metabolism [F] | 24 |
Posttranslational modification, protein turnover, chaperones [O] | 46 |
RNA processing and modification [A] | 0 |
Replication, recombination and repair [L] | 62 |
Secondary metabolites biosynthesis, transport and catabolism [Q] | 4 |
Signal transduction mechanisms [T] | 40 |
Transcription [K] | 34 |
Translation, ribosomal structure and biogenesis [J] | 121 |
Unclassified [-] | 242 |