SGB - The Spirochetes Genome Browser - Summary for Borrelia afzelii, PKo.

	Borrelia afzelii, PKo
Genomic elements	1 chromosomes(s), 9 linear plasmid(s), 2 circular plasmid(s) Hide details PKO-g-P-chrIn1v1.w1 length: 905394 bp gc-content (intragenic): 0.291482 % Confidence [min/max/avg]: 2/99/92 Coverage [min/max/avg]: 1/20/6 CDS: 856 genes, length ø 992 bp, gc-content ø 0.28 Confidence [min/max/avg]: 2/99/91.1881 Coverage [min/max/avg]: 1/19/5.1437 '+'-strand: 422 genes, length ø 1003 bp, gc-content ø 0.28 Confidence [min/max/avg]: 2/99/91.5190 Coverage [min/max/avg]: 2/19/5.2464 '-'-strand: 434 genes, length ø 981 bp, gc-content ø 0.281 Confidence [min/max/avg]: 2/99/90.8664 Coverage [min/max/avg]: 1/17/5.0438 rRNA: 5 genes, length ø 1525 bp, gc-content ø 0.453 Confidence [min/max/avg]: 3/99/98.0000 Coverage [min/max/avg]: 3/20/7.6000 '+'-strand: 4 genes, length ø 1523 bp, gc-content ø 0.45 Confidence [min/max/avg]: 3/99/98.0000 Coverage [min/max/avg]: 3/20/8.2500 '-'-strand: 1 genes, length ø 1537 bp, gc-content ø 0.465 Confidence [min/max/avg]: 71/99/98.0000 Coverage [min/max/avg]: 4/7/5.0000 tRNA: 33 genes, length ø 76 bp, gc-content ø 0.543 Confidence [min/max/avg]: 2/99/82.2424 Coverage [min/max/avg]: 2/9/4.9697 '+'-strand: 21 genes, length ø 77 bp, gc-content ø 0.537 Confidence [min/max/avg]: 2/99/82.1905 Coverage [min/max/avg]: 2/8/4.7619 '-'-strand: 12 genes, length ø 74 bp, gc-content ø 0.554 Confidence [min/max/avg]: 4/99/82.3333 Coverage [min/max/avg]: 3/9/5.3333 PKO13310-1f08-a-g.r1 length: 26533 bp gc-content (intragenic): 0.255821 % Confidence [min/max/avg]: 2/99/89 Coverage [min/max/avg]: 1/13/5 CDS: 28 genes, length ø 825 bp, gc-content ø 0.255 Confidence [min/max/avg]: 2/99/87.8929 Coverage [min/max/avg]: 1/13/4.2500 '+'-strand: 14 genes, length ø 829 bp, gc-content ø 0.256 Confidence [min/max/avg]: 2/99/85.8571 Coverage [min/max/avg]: 1/13/4.5000 '-'-strand: 14 genes, length ø 821 bp, gc-content ø 0.255 Confidence [min/max/avg]: 9/99/89.9286 Coverage [min/max/avg]: 2/12/4.0000 PKO134-G-p-1.p318 length: 15403 bp gc-content (intragenic): 0.279307 % Confidence [min/max/avg]: 3/99/66 Coverage [min/max/avg]: 1/8/2 CDS: 24 genes, length ø 350 bp, gc-content ø 0.279 Confidence [min/max/avg]: 3/99/62.2083 Coverage [min/max/avg]: 1/6/1.6667 '+'-strand: 12 genes, length ø 271 bp, gc-content ø 0.3 Confidence [min/max/avg]: 3/99/55.5000 Coverage [min/max/avg]: 1/6/1.5000 '-'-strand: 12 genes, length ø 430 bp, gc-content ø 0.258 Confidence [min/max/avg]: 3/99/68.9167 Coverage [min/max/avg]: 1/5/1.8333 PKO134-G-p-62.p179 length: 32368 bp gc-content (intragenic): 0.261931 % Confidence [min/max/avg]: 3/99/90 Coverage [min/max/avg]: 1/9/4 CDS: 55 genes, length ø 385 bp, gc-content ø 0.261 Confidence [min/max/avg]: 3/99/89.0364 Coverage [min/max/avg]: 1/9/3.3273 '+'-strand: 39 genes, length ø 427 bp, gc-content ø 0.261 Confidence [min/max/avg]: 3/99/87.4103 Coverage [min/max/avg]: 1/9/3.1282 '-'-strand: 16 genes, length ø 283 bp, gc-content ø 0.263 Confidence [min/max/avg]: 32/99/93.0000 Coverage [min/max/avg]: 1/8/3.8125 PKO134-g-a-01h07.f1 length: 59958 bp gc-content (intragenic): 0.279767 % Confidence [min/max/avg]: 2/100/89 Coverage [min/max/avg]: 1/19/7 CDS: 75 genes, length ø 650 bp, gc-content ø 0.279 Confidence [min/max/avg]: 2/100/90.1867 Coverage [min/max/avg]: 1/19/6.3867 '+'-strand: 49 genes, length ø 606 bp, gc-content ø 0.278 Confidence [min/max/avg]: 3/99/92.6939 Coverage [min/max/avg]: 2/19/6.7959 '-'-strand: 26 genes, length ø 733 bp, gc-content ø 0.282 Confidence [min/max/avg]: 2/100/85.4615 Coverage [min/max/avg]: 1/16/5.6154 PKO134-g-b-13c07.f1 length: 6847 bp gc-content (intragenic): 0.259831 % Confidence [min/max/avg]: 3/99/56 Coverage [min/max/avg]: 1/5/2 CDS: 10 genes, length ø 290 bp, gc-content ø 0.259 Confidence [min/max/avg]: 3/99/51.4000 Coverage [min/max/avg]: 1/5/1.3000 '+'-strand: 3 genes, length ø 346 bp, gc-content ø 0.238 Confidence [min/max/avg]: 3/99/46.6667 Coverage [min/max/avg]: 1/3/1.0000 '-'-strand: 7 genes, length ø 266 bp, gc-content ø 0.268 Confidence [min/max/avg]: 6/99/53.4286 Coverage [min/max/avg]: 1/5/1.4286 PKO134-g-b-19e02.r1 length: 8579 bp gc-content (intragenic): 0.294794 % Confidence [min/max/avg]: 3/99/58 Coverage [min/max/avg]: 1/4/2 CDS: 14 genes, length ø 511 bp, gc-content ø 0.294 Confidence [min/max/avg]: 3/99/54.3571 Coverage [min/max/avg]: 1/4/1.3571 '+'-strand: 0 genes, length ø 0 bp, gc-content ø 0 Confidence [min/max/avg]: // Coverage [min/max/avg]: // '-'-strand: 14 genes, length ø 511 bp, gc-content ø 0.294 Confidence [min/max/avg]: 3/99/54.3571 Coverage [min/max/avg]: 1/4/1.3571 PKO72-g-a-32h02.s1 length: 24794 bp gc-content (intragenic): 0.313477 % Confidence [min/max/avg]: 3/99/83 Coverage [min/max/avg]: 1/12/4 CDS: 29 genes, length ø 758 bp, gc-content ø 0.313 Confidence [min/max/avg]: 3/99/80.1379 Coverage [min/max/avg]: 1/12/3.4828 '+'-strand: 21 genes, length ø 762 bp, gc-content ø 0.312 Confidence [min/max/avg]: 3/99/78.3810 Coverage [min/max/avg]: 1/12/3.7143 '-'-strand: 8 genes, length ø 747 bp, gc-content ø 0.316 Confidence [min/max/avg]: 17/99/84.7500 Coverage [min/max/avg]: 1/8/2.8750 PKO72-g-a-39f06.r1 length: 34273 bp gc-content (intragenic): 0.24423 % Confidence [min/max/avg]: 3/99/86 Coverage [min/max/avg]: 1/9/4 CDS: 36 genes, length ø 449 bp, gc-content ø 0.244 Confidence [min/max/avg]: 8/99/88.4444 Coverage [min/max/avg]: 1/9/3.6667 '+'-strand: 18 genes, length ø 516 bp, gc-content ø 0.235 Confidence [min/max/avg]: 8/99/87.0556 Coverage [min/max/avg]: 1/9/3.5000 '-'-strand: 18 genes, length ø 382 bp, gc-content ø 0.253 Confidence [min/max/avg]: 15/99/89.8333 Coverage [min/max/avg]: 1/8/3.8333 PKO72-g-a-43h03.f1 length: 30017 bp gc-content (intragenic): 0.299388 % Confidence [min/max/avg]: 2/99/82 Coverage [min/max/avg]: 1/11/4 CDS: 43 genes, length ø 605 bp, gc-content ø 0.299 Confidence [min/max/avg]: 2/99/80.0465 Coverage [min/max/avg]: 1/11/3.9070 '+'-strand: 4 genes, length ø 556 bp, gc-content ø 0.274 Confidence [min/max/avg]: 46/99/93.2500 Coverage [min/max/avg]: 1/9/4.2500 '-'-strand: 39 genes, length ø 610 bp, gc-content ø 0.301 Confidence [min/max/avg]: 2/99/78.6923 Coverage [min/max/avg]: 1/11/3.8718 PKO72-g-a-44e11.f1 length: 59804 bp gc-content (intragenic): 0.255303 % Confidence [min/max/avg]: 3/100/92 Coverage [min/max/avg]: 1/16/5 CDS: 59 genes, length ø 581 bp, gc-content ø 0.255 Confidence [min/max/avg]: 3/99/90.1017 Coverage [min/max/avg]: 1/16/4.6102 '+'-strand: 29 genes, length ø 477 bp, gc-content ø 0.257 Confidence [min/max/avg]: 7/99/90.8966 Coverage [min/max/avg]: 1/16/4.6897 '-'-strand: 30 genes, length ø 681 bp, gc-content ø 0.252 Confidence [min/max/avg]: 3/99/89.3333 Coverage [min/max/avg]: 1/16/4.5333 PKO72-g-a-9f08.f1 length: 28533 bp gc-content (intragenic): 0.265265 % Confidence [min/max/avg]: 3/99/93 Coverage [min/max/avg]: 1/20/9 CDS: 34 genes, length ø 518 bp, gc-content ø 0.265 Confidence [min/max/avg]: 3/99/92.0588 Coverage [min/max/avg]: 1/20/7.4706 '+'-strand: 16 genes, length ø 541 bp, gc-content ø 0.255 Confidence [min/max/avg]: 17/99/97.3125 Coverage [min/max/avg]: 1/20/9.0625 '-'-strand: 18 genes, length ø 498 bp, gc-content ø 0.274 Confidence [min/max/avg]: 3/99/87.3889 Coverage [min/max/avg]: 1/18/6.0556
Genome features	CDS: 1263 genes, length ø 853 bp, gc-content ø 0.278 Confidence [min/max/avg]: 2/100/88.9493 Coverage [min/max/avg]: 1/20/4.8955 '+'-strand: 627 genes, length ø 854 bp, gc-content ø 0.276 Confidence [min/max/avg]: 2/99/89.8868 Coverage [min/max/avg]: 1/20/5.0909 '-'-strand: 636 genes, length ø 851 bp, gc-content ø 0.279 Confidence [min/max/avg]: 2/100/88.0252 Coverage [min/max/avg]: 1/18/4.7028 rRNA: 5 genes, length ø 1525 bp, gc-content ø 0.453 Confidence [min/max/avg]: 3/99/98.0000 Coverage [min/max/avg]: 3/20/7.6000 '+'-strand: 4 genes, length ø 1523 bp, gc-content ø 0.45 Confidence [min/max/avg]: 3/99/98.0000 Coverage [min/max/avg]: 3/20/8.2500 '-'-strand: 1 genes, length ø 1537 bp, gc-content ø 0.465 Confidence [min/max/avg]: 71/99/98.0000 Coverage [min/max/avg]: 4/7/5.0000 tRNA: 33 genes, length ø 76 bp, gc-content ø 0.543 Confidence [min/max/avg]: 2/99/82.2424 Coverage [min/max/avg]: 2/9/4.9697 '+'-strand: 21 genes, length ø 77 bp, gc-content ø 0.537 Confidence [min/max/avg]: 2/99/82.1905 Coverage [min/max/avg]: 2/8/4.7619 '-'-strand: 12 genes, length ø 74 bp, gc-content ø 0.554 Confidence [min/max/avg]: 4/99/82.3333 Coverage [min/max/avg]: 3/9/5.3333
COG categories
Amino acid transport and metabolism [E]	37
Carbohydrate transport and metabolism [G]	49
Cell cycle control, mitosis and meiosis [D]	41
Cell motility [N]	77
Cell wall/membrane biogenesis [M]	44
Chromatin structure and dynamics [B]	0
Coenzyme transport and metabolism [H]	12
Cytoskeleton [Z]	0
Defense mechanisms [V]	0
Energy production and conversion [C]	22
Extracellular structures [W]	0
Function unknown [S]	43
General function prediction only [R]	88
Inorganic ion transport and metabolism [P]	32
Intracellular trafficking and secretion [U]	0
Lipid transport and metabolism [I]	15
NOT ANALYZED	38
Nuclear structure [Y]	0
Nucleotide transport and metabolism [F]	27
Posttranslational modification, protein turnover, chaperones [O]	31
RNA processing and modification [A]	0
Replication, recombination and repair [L]	71
Secondary metabolites biosynthesis, transport and catabolism [Q]	10
Signal transduction mechanisms [T]	21
Transcription [K]	23
Translation, ribosomal structure and biogenesis [J]	113
Unclassified [-]	549