SGB - The Spirochetes Genome Browser - Summary for Borrelia garinii High passage (300), PBi.

	Borrelia garinii High passage (300), PBi
Genomic elements	13 segment(s) Hide details G1Mb28h10.r1 length: 53707 bp gc-content (intragenic): 0.275544 % Confidence [min/max/avg]: 2/99/83 Coverage [min/max/avg]: 1/16/5 CDS: 70 genes, length ø 521 bp, gc-content ø 0.275 Confidence [min/max/avg]: 2/99/78.4429 Coverage [min/max/avg]: 1/15/4.2714 '+'-strand: 19 genes, length ø 369 bp, gc-content ø 0.267 Confidence [min/max/avg]: 2/99/74.0000 Coverage [min/max/avg]: 1/10/3.2105 '-'-strand: 51 genes, length ø 577 bp, gc-content ø 0.278 Confidence [min/max/avg]: 2/99/80.0980 Coverage [min/max/avg]: 1/15/4.6667 G1a22e11.r1 length: 28584 bp gc-content (intragenic): 0.291252 % Confidence [min/max/avg]: 2/99/78 Coverage [min/max/avg]: 1/8/3 CDS: 42 genes, length ø 608 bp, gc-content ø 0.291 Confidence [min/max/avg]: 2/99/78.7381 Coverage [min/max/avg]: 1/8/3.0238 '+'-strand: 4 genes, length ø 469 bp, gc-content ø 0.304 Confidence [min/max/avg]: 10/99/73.0000 Coverage [min/max/avg]: 1/4/2.0000 '-'-strand: 38 genes, length ø 622 bp, gc-content ø 0.289 Confidence [min/max/avg]: 2/99/79.3421 Coverage [min/max/avg]: 1/8/3.1316 NC_006156.1 length: 904831 bp gc-content (intragenic): 0.300304 % Confidence [min/max/avg]: 2/99/79 Coverage [min/max/avg]: 1/20/4 CDS: 849 genes, length ø 998 bp, gc-content ø 0.283 Confidence [min/max/avg]: 2/99/77.4370 Coverage [min/max/avg]: 1/19/3.7998 '+'-strand: 415 genes, length ø 1019 bp, gc-content ø 0.281 Confidence [min/max/avg]: 2/99/78.1663 Coverage [min/max/avg]: 1/15/3.8072 '-'-strand: 434 genes, length ø 978 bp, gc-content ø 0.284 Confidence [min/max/avg]: 2/99/76.7396 Coverage [min/max/avg]: 1/19/3.7926 rRNA: 5 genes, length ø 1526 bp, gc-content ø 0.459 Confidence [min/max/avg]: 2/99/95.8000 Coverage [min/max/avg]: 1/20/8.0000 '+'-strand: 4 genes, length ø 1523 bp, gc-content ø 0.458 Confidence [min/max/avg]: 2/99/95.2500 Coverage [min/max/avg]: 1/20/7.7500 '-'-strand: 1 genes, length ø 1538 bp, gc-content ø 0.464 Confidence [min/max/avg]: 87/99/98.0000 Coverage [min/max/avg]: 5/15/9.0000 tRNA: 33 genes, length ø 76 bp, gc-content ø 0.543 Confidence [min/max/avg]: 2/99/73.9091 Coverage [min/max/avg]: 1/16/3.7273 '+'-strand: 21 genes, length ø 77 bp, gc-content ø 0.539 Confidence [min/max/avg]: 2/99/76.2381 Coverage [min/max/avg]: 1/7/3.4762 '-'-strand: 12 genes, length ø 74 bp, gc-content ø 0.551 Confidence [min/max/avg]: 2/99/69.8333 Coverage [min/max/avg]: 1/16/4.1667 variation: 38 genes, length ø 1 bp, gc-content ø 0.21 Confidence [min/max/avg]: 13/99/85.0789 Coverage [min/max/avg]: 2/12/5.4211 '+'-strand: 38 genes, length ø 1 bp, gc-content ø 0.21 Confidence [min/max/avg]: 13/99/85.0789 Coverage [min/max/avg]: 2/12/5.4211 '-'-strand: 0 genes, length ø 0 bp, gc-content ø 0 Confidence [min/max/avg]: // Coverage [min/max/avg]: // NT_108227.1 length: 27673 bp gc-content (intragenic): 0.316148 % Confidence [min/max/avg]: 2/99/95 Coverage [min/max/avg]: 1/25/12 CDS: 31 genes, length ø 839 bp, gc-content ø 0.316 Confidence [min/max/avg]: 2/99/96.4839 Coverage [min/max/avg]: 1/25/12.4194 '+'-strand: 27 genes, length ø 850 bp, gc-content ø 0.315 Confidence [min/max/avg]: 2/99/96.3333 Coverage [min/max/avg]: 1/25/13.0000 '-'-strand: 4 genes, length ø 767 bp, gc-content ø 0.321 Confidence [min/max/avg]: 68/99/97.5000 Coverage [min/max/avg]: 4/15/8.5000 NT_108230.1 length: 24153 bp gc-content (intragenic): 0.257883 % Confidence [min/max/avg]: 2/99/95 Coverage [min/max/avg]: 1/17/8 CDS: 33 genes, length ø 417 bp, gc-content ø 0.257 Confidence [min/max/avg]: 2/99/93.6364 Coverage [min/max/avg]: 1/16/8.4545 '+'-strand: 16 genes, length ø 444 bp, gc-content ø 0.26 Confidence [min/max/avg]: 40/99/97.7500 Coverage [min/max/avg]: 3/16/8.8750 '-'-strand: 17 genes, length ø 391 bp, gc-content ø 0.255 Confidence [min/max/avg]: 2/99/89.7647 Coverage [min/max/avg]: 1/16/8.0588 NT_108238.2 length: 5982 bp gc-content (intragenic): 0.497939 % Confidence [min/max/avg]: 2/99/17 Coverage [min/max/avg]: 1/9/2 CDS: 4 genes, length ø 1435 bp, gc-content ø 0.497 Confidence [min/max/avg]: 2/99/8.2500 Coverage [min/max/avg]: 1/9/1.2500 '+'-strand: 0 genes, length ø 0 bp, gc-content ø 0 Confidence [min/max/avg]: // Coverage [min/max/avg]: // '-'-strand: 4 genes, length ø 1435 bp, gc-content ø 0.497 Confidence [min/max/avg]: 2/99/8.2500 Coverage [min/max/avg]: 1/9/1.2500 PBI300PCR17p13 length: 21017 bp gc-content (intragenic): 0.267037 % Confidence [min/max/avg]: 2/99/91 Coverage [min/max/avg]: 1/17/7 CDS: 27 genes, length ø 497 bp, gc-content ø 0.267 Confidence [min/max/avg]: 2/99/89.3333 Coverage [min/max/avg]: 1/16/5.8889 '+'-strand: 17 genes, length ø 366 bp, gc-content ø 0.273 Confidence [min/max/avg]: 2/99/91.2353 Coverage [min/max/avg]: 1/16/6.8235 '-'-strand: 10 genes, length ø 721 bp, gc-content ø 0.255 Confidence [min/max/avg]: 2/99/86.1000 Coverage [min/max/avg]: 1/12/4.3000 PBI300a01b12.s1 length: 50192 bp gc-content (intragenic): 0.268298 % Confidence [min/max/avg]: 2/99/76 Coverage [min/max/avg]: 1/12/4 CDS: 76 genes, length ø 374 bp, gc-content ø 0.268 Confidence [min/max/avg]: 2/99/77.6316 Coverage [min/max/avg]: 1/12/3.7632 '+'-strand: 44 genes, length ø 401 bp, gc-content ø 0.266 Confidence [min/max/avg]: 2/99/76.6136 Coverage [min/max/avg]: 1/12/3.9773 '-'-strand: 32 genes, length ø 337 bp, gc-content ø 0.27 Confidence [min/max/avg]: 2/99/79.0313 Coverage [min/max/avg]: 1/9/3.4688 PBI300a20b10.r1 length: 58712 bp gc-content (intragenic): 0.27363 % Confidence [min/max/avg]: 2/99/94 Coverage [min/max/avg]: 1/18/7 CDS: 88 genes, length ø 495 bp, gc-content ø 0.273 Confidence [min/max/avg]: 2/99/94.5568 Coverage [min/max/avg]: 1/18/6.9773 '+'-strand: 61 genes, length ø 430 bp, gc-content ø 0.271 Confidence [min/max/avg]: 2/99/94.9016 Coverage [min/max/avg]: 1/18/7.2623 '-'-strand: 27 genes, length ø 642 bp, gc-content ø 0.277 Confidence [min/max/avg]: 2/99/93.7778 Coverage [min/max/avg]: 1/15/6.3333 PBI300a21a10.s1 length: 22300 bp gc-content (intragenic): 0.250114 % Confidence [min/max/avg]: 2/99/81 Coverage [min/max/avg]: 1/10/4 CDS: 21 genes, length ø 528 bp, gc-content ø 0.25 Confidence [min/max/avg]: 2/99/78.9048 Coverage [min/max/avg]: 1/10/3.0952 '+'-strand: 11 genes, length ø 505 bp, gc-content ø 0.256 Confidence [min/max/avg]: 2/99/78.7273 Coverage [min/max/avg]: 1/6/2.9091 '-'-strand: 10 genes, length ø 553 bp, gc-content ø 0.243 Confidence [min/max/avg]: 2/99/79.1000 Coverage [min/max/avg]: 1/10/3.3000 PBI300a34d11.s1 length: 21089 bp gc-content (intragenic): 0.305235 % Confidence [min/max/avg]: 3/99/83 Coverage [min/max/avg]: 1/12/4 CDS: 34 genes, length ø 517 bp, gc-content ø 0.305 Confidence [min/max/avg]: 3/99/82.5294 Coverage [min/max/avg]: 1/12/3.2059 '+'-strand: 27 genes, length ø 551 bp, gc-content ø 0.302 Confidence [min/max/avg]: 3/99/82.2222 Coverage [min/max/avg]: 1/12/3.2963 '-'-strand: 7 genes, length ø 386 bp, gc-content ø 0.315 Confidence [min/max/avg]: 31/99/83.7143 Coverage [min/max/avg]: 1/6/2.8571 PBI300d04e03.r1 length: 28219 bp gc-content (intragenic): 0.248691 % Confidence [min/max/avg]: 2/99/85 Coverage [min/max/avg]: 1/13/5 CDS: 35 genes, length ø 701 bp, gc-content ø 0.248 Confidence [min/max/avg]: 2/99/79.9429 Coverage [min/max/avg]: 1/13/3.9714 '+'-strand: 18 genes, length ø 695 bp, gc-content ø 0.251 Confidence [min/max/avg]: 2/99/78.2222 Coverage [min/max/avg]: 1/13/3.8333 '-'-strand: 17 genes, length ø 708 bp, gc-content ø 0.245 Confidence [min/max/avg]: 2/99/81.7647 Coverage [min/max/avg]: 1/12/4.1176 PBI300d10f02.r2 length: 31009 bp gc-content (intragenic): 0.291419 % Confidence [min/max/avg]: 2/99/83 Coverage [min/max/avg]: 1/13/4 CDS: 43 genes, length ø 665 bp, gc-content ø 0.291 Confidence [min/max/avg]: 2/99/83.3953 Coverage [min/max/avg]: 1/13/3.8837 '+'-strand: 3 genes, length ø 618 bp, gc-content ø 0.232 Confidence [min/max/avg]: 2/99/62.0000 Coverage [min/max/avg]: 1/5/2.0000 '-'-strand: 40 genes, length ø 668 bp, gc-content ø 0.295 Confidence [min/max/avg]: 2/99/85.0000 Coverage [min/max/avg]: 1/13/4.0250
Genome features	CDS: 1353 genes, length ø 829 bp, gc-content ø 0.281 Confidence [min/max/avg]: 2/99/79.9231 Coverage [min/max/avg]: 1/25/4.3311 '+'-strand: 662 genes, length ø 826 bp, gc-content ø 0.279 Confidence [min/max/avg]: 2/99/81.1073 Coverage [min/max/avg]: 1/25/4.6405 '-'-strand: 691 genes, length ø 832 bp, gc-content ø 0.283 Confidence [min/max/avg]: 2/99/78.7887 Coverage [min/max/avg]: 1/19/4.0347 rRNA: 5 genes, length ø 1526 bp, gc-content ø 0.459 Confidence [min/max/avg]: 2/99/95.8000 Coverage [min/max/avg]: 1/20/8.0000 '+'-strand: 4 genes, length ø 1523 bp, gc-content ø 0.458 Confidence [min/max/avg]: 2/99/95.2500 Coverage [min/max/avg]: 1/20/7.7500 '-'-strand: 1 genes, length ø 1538 bp, gc-content ø 0.464 Confidence [min/max/avg]: 87/99/98.0000 Coverage [min/max/avg]: 5/15/9.0000 tRNA: 33 genes, length ø 76 bp, gc-content ø 0.543 Confidence [min/max/avg]: 2/99/73.9091 Coverage [min/max/avg]: 1/16/3.7273 '+'-strand: 21 genes, length ø 77 bp, gc-content ø 0.539 Confidence [min/max/avg]: 2/99/76.2381 Coverage [min/max/avg]: 1/7/3.4762 '-'-strand: 12 genes, length ø 74 bp, gc-content ø 0.551 Confidence [min/max/avg]: 2/99/69.8333 Coverage [min/max/avg]: 1/16/4.1667 variation: 38 genes, length ø 1 bp, gc-content ø 0.21 Confidence [min/max/avg]: 13/99/85.0789 Coverage [min/max/avg]: 2/12/5.4211 '+'-strand: 38 genes, length ø 1 bp, gc-content ø 0.21 Confidence [min/max/avg]: 13/99/85.0789 Coverage [min/max/avg]: 2/12/5.4211 '-'-strand: 0 genes, length ø 0 bp, gc-content ø 0
COG categories
Amino acid transport and metabolism [E]	39
Carbohydrate transport and metabolism [G]	54
Cell cycle control, mitosis and meiosis [D]	49
Cell motility [N]	77
Cell wall/membrane biogenesis [M]	47
Chromatin structure and dynamics [B]	0
Coenzyme transport and metabolism [H]	13
Cytoskeleton [Z]	0
Defense mechanisms [V]	2
Energy production and conversion [C]	27
Extracellular structures [W]	1
Function unknown [S]	49
General function prediction only [R]	99
Inorganic ion transport and metabolism [P]	33
Intracellular trafficking and secretion [U]	2
Lipid transport and metabolism [I]	17
NOT ANALYZED	76
Nuclear structure [Y]	0
Nucleotide transport and metabolism [F]	25
Posttranslational modification, protein turnover, chaperones [O]	32
RNA processing and modification [A]	0
Replication, recombination and repair [L]	85
Secondary metabolites biosynthesis, transport and catabolism [Q]	11
Signal transduction mechanisms [T]	25
Transcription [K]	28
Translation, ribosomal structure and biogenesis [J]	116
Unclassified [-]	574