SGB - The Spirochetes Genome Browser - Summary for Borrelia burgdorferi, B31.

Title

+ Borrelia afzelii, PKo

+ Borrelia burgdorferi ZS7, ZS7

+ Borrelia burgdorferi, B31

+ Borrelia duttonii Ly, Ly

+ Borrelia garinii High passage (300), PBi

+ Borrelia garinii, PBi

+ Borrelia hermsii DAH, DAH

+ Borrelia recurrentis A1, A1

+ Borrelia turicatae 91E135, 91E135

+ Leptospira biflexa serovar Patoc strain Patoc 1 (Ames), Patoc 1 (Ames)

+ Leptospira biflexa serovar Patoc strain Patoc 1 (Paris), Patoc 1 (Paris)

+ Leptospira borgpetersenii serovar Hardjo-bovis JB197, JB197

+ Leptospira borgpetersenii serovar Hardjo-bovis L550, L550

+ Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130

+ Leptospira interrogans serovar lai str. 56601

+ Treponema denticola ATCC 35405

+ Treponema pallidum

+ Treponema pallidum subsp. pallidum SS14, SS14

+ COG functional categories

+ (Clickable) linear whole genome views

+ Horizontal gene transfer (predicted by SIGI-HMM)

+ Sequence retrieval

+ Advanced search

+ Sequence similarity search

+ Best bidirectional hits (protein-based analysis)

+ Gene core sets (protein-based analysis)

+ Gene partnerships (DNA-based analysis)

+ Protein variations (protein-based analysis)

+ Synteny analysis (protein-based analysis)

+ Gene conservation (protein-based analysis)

+ Codon and amino acid usages (DNA- and protein-based analysis)

+ Alignments of whole reference and target genomic elements (DNA-based analysis)

Summary for Borrelia burgdorferi, B31.

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chr: chromosome(s), pl: plasmid(s), seg: segment(s)

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	Borrelia burgdorferi, B31
Genomic elements	1 chromosomes(s), 12 linear plasmid(s), 9 circular plasmid(s) Show details
Genome features	CDS: 1639 genes, length ø 795 bp, gc-content ø 0.281 '+'-strand: 982 genes, length ø 763 bp, gc-content ø 0.282 '-'-strand: 657 genes, length ø 842 bp, gc-content ø 0.279 pseudo: 8 genes, length ø 344 bp, gc-content ø 0.251 '+'-strand: 3 genes, length ø 306 bp, gc-content ø 0.219 '-'-strand: 5 genes, length ø 366 bp, gc-content ø 0.27 rRNA: 5 genes, length ø 1523 bp, gc-content ø 0.459 '+'-strand: 2 genes, length ø 112 bp, gc-content ø 0.473 '-'-strand: 3 genes, length ø 2463 bp, gc-content ø 0.45 tRNA: 18 genes, length ø 74 bp, gc-content ø 0.549 '+'-strand: 11 genes, length ø 75 bp, gc-content ø 0.542 '-'-strand: 7 genes, length ø 73 bp, gc-content ø 0.559
COG categories
Amino acid transport and metabolism [E]	33
Carbohydrate transport and metabolism [G]	49
Cell cycle control, mitosis and meiosis [D]	54
Cell motility [N]	74
Cell wall/membrane biogenesis [M]	45
Chromatin structure and dynamics [B]	0
Coenzyme transport and metabolism [H]	10
Cytoskeleton [Z]	0
Defense mechanisms [V]	0
Energy production and conversion [C]	24
Extracellular structures [W]	0
Function unknown [S]	57
General function prediction only [R]	94
Inorganic ion transport and metabolism [P]	27
Intracellular trafficking and secretion [U]	0
Lipid transport and metabolism [I]	14
NOT ANALYZED	31
Nuclear structure [Y]	0
Nucleotide transport and metabolism [F]	27
Posttranslational modification, protein turnover, chaperones [O]	29
RNA processing and modification [A]	0
Replication, recombination and repair [L]	72
Secondary metabolites biosynthesis, transport and catabolism [Q]	9
Signal transduction mechanisms [T]	14
Transcription [K]	21
Translation, ribosomal structure and biogenesis [J]	117
Unclassified [-]	878