TitleGenColors Logo
spacer
Home spacerGenomes
spacerMethods
spacerDocumentation spacerExternal links spacerContactspacer spacerLeibniz FLI
spacer
QuickSearch
2024-05-12 10:10:38
Summary for Borrelia burgdorferi, B31.
Add a genome
Remove a genome
 
chr: chromosome(s), pl: plasmid(s), seg: segment(s)
Free access

 

 Borrelia burgdorferi, B31
Genomic elements1 chromosomes(s), 12 linear plasmid(s), 9 circular plasmid(s)
Hide details
 
chromosome
length: 910724 bp
gc-content (intragenic): 0.290677 %

 
CDS:
850 genes, length ø 1002 bp, gc-content ø 0.284
 
'+'-strand:
428 genes, length ø 1000 bp, gc-content ø 0.284
 
'-'-strand:
422 genes, length ø 1005 bp, gc-content ø 0.284
 
rRNA:
5 genes, length ø 1523 bp, gc-content ø 0.459
 
'+'-strand:
2 genes, length ø 112 bp, gc-content ø 0.473
 
'-'-strand:
3 genes, length ø 2463 bp, gc-content ø 0.45
 
tRNA:
18 genes, length ø 74 bp, gc-content ø 0.549
 
'+'-strand:
11 genes, length ø 75 bp, gc-content ø 0.542
 
'-'-strand:
7 genes, length ø 73 bp, gc-content ø 0.559
 

 
cp26
length: 26498 bp
gc-content (intragenic): 0.257984 %

 
CDS:
29 genes, length ø 805 bp, gc-content ø 0.257
 
'+'-strand:
16 genes, length ø 741 bp, gc-content ø 0.254
 
'-'-strand:
13 genes, length ø 883 bp, gc-content ø 0.261
 

 
cp32-1
length: 30750 bp
gc-content (intragenic): 0.296658 %

 
CDS:
42 genes, length ø 677 bp, gc-content ø 0.296
 
'+'-strand:
39 genes, length ø 671 bp, gc-content ø 0.297
 
'-'-strand:
3 genes, length ø 758 bp, gc-content ø 0.28
 

 
cp32-3
length: 30223 bp
gc-content (intragenic): 0.288686 %

 
CDS:
45 genes, length ø 623 bp, gc-content ø 0.288
 
'+'-strand:
43 genes, length ø 614 bp, gc-content ø 0.289
 
'-'-strand:
2 genes, length ø 825 bp, gc-content ø 0.275
 

 
cp32-4
length: 30299 bp
gc-content (intragenic): 0.293076 %

 
CDS:
44 genes, length ø 625 bp, gc-content ø 0.293
 
'+'-strand:
40 genes, length ø 635 bp, gc-content ø 0.292
 
'-'-strand:
4 genes, length ø 521 bp, gc-content ø 0.3
 

 
cp32-6
length: 29838 bp
gc-content (intragenic): 0.295255 %

 
CDS:
42 genes, length ø 661 bp, gc-content ø 0.295
 
'+'-strand:
38 genes, length ø 655 bp, gc-content ø 0.297
 
'-'-strand:
4 genes, length ø 717 bp, gc-content ø 0.272
 

 
cp32-7
length: 30800 bp
gc-content (intragenic): 0.290297 %

 
CDS:
44 genes, length ø 657 bp, gc-content ø 0.29
 
'+'-strand:
40 genes, length ø 671 bp, gc-content ø 0.296
 
'-'-strand:
4 genes, length ø 519 bp, gc-content ø 0.229
 

 
cp32-8
length: 30885 bp
gc-content (intragenic): 0.29159 %

 
CDS:
43 genes, length ø 667 bp, gc-content ø 0.291
 
'+'-strand:
41 genes, length ø 654 bp, gc-content ø 0.292
 
'-'-strand:
2 genes, length ø 925 bp, gc-content ø 0.27
 

 
cp32-9
length: 30651 bp
gc-content (intragenic): 0.291179 %

 
CDS:
35 genes, length ø 634 bp, gc-content ø 0.291
 
'+'-strand:
33 genes, length ø 662 bp, gc-content ø 0.295
 
'-'-strand:
2 genes, length ø 166 bp, gc-content ø 0.222
 

 
cp9
length: 9386 bp
gc-content (intragenic): 0.242188 %

 
CDS:
11 genes, length ø 647 bp, gc-content ø 0.242
 
'+'-strand:
6 genes, length ø 730 bp, gc-content ø 0.239
 
'-'-strand:
5 genes, length ø 548 bp, gc-content ø 0.245
 

 
lp17
length: 16823 bp
gc-content (intragenic): 0.237756 %

 
CDS:
23 genes, length ø 369 bp, gc-content ø 0.237
 
'+'-strand:
16 genes, length ø 391 bp, gc-content ø 0.235
 
'-'-strand:
7 genes, length ø 320 bp, gc-content ø 0.241
 

 
lp21
length: 18753 bp
gc-content (intragenic): 0.238235 %

 
CDS:
11 genes, length ø 520 bp, gc-content ø 0.238
 
'+'-strand:
9 genes, length ø 587 bp, gc-content ø 0.224
 
'-'-strand:
2 genes, length ø 220 bp, gc-content ø 0.302
 

 
lp25
length: 24177 bp
gc-content (intragenic): 0.246529 %

 
CDS:
29 genes, length ø 443 bp, gc-content ø 0.246
 
'+'-strand:
10 genes, length ø 222 bp, gc-content ø 0.249
 
'-'-strand:
19 genes, length ø 560 bp, gc-content ø 0.245
 

 
lp28-1
length: 26921 bp
gc-content (intragenic): 0.257556 %

 
CDS:
26 genes, length ø 369 bp, gc-content ø 0.257
 
'+'-strand:
11 genes, length ø 302 bp, gc-content ø 0.255
 
'-'-strand:
15 genes, length ø 418 bp, gc-content ø 0.259
 

 
lp28-2
length: 29766 bp
gc-content (intragenic): 0.317152 %

 
CDS:
32 genes, length ø 814 bp, gc-content ø 0.317
 
'+'-strand:
12 genes, length ø 780 bp, gc-content ø 0.29
 
'-'-strand:
20 genes, length ø 834 bp, gc-content ø 0.332
 

 
lp28-3
length: 28601 bp
gc-content (intragenic): 0.264392 %

 
CDS:
37 genes, length ø 438 bp, gc-content ø 0.264
 
'+'-strand:
21 genes, length ø 359 bp, gc-content ø 0.266
 
'-'-strand:
16 genes, length ø 542 bp, gc-content ø 0.262
 

 
lp28-4
length: 27323 bp
gc-content (intragenic): 0.259566 %

 
CDS:
43 genes, length ø 394 bp, gc-content ø 0.259
 
'+'-strand:
25 genes, length ø 408 bp, gc-content ø 0.244
 
'-'-strand:
18 genes, length ø 375 bp, gc-content ø 0.28
 

 
lp36
length: 36849 bp
gc-content (intragenic): 0.268092 %

 
CDS:
51 genes, length ø 457 bp, gc-content ø 0.268
 
'+'-strand:
26 genes, length ø 378 bp, gc-content ø 0.263
 
'-'-strand:
25 genes, length ø 538 bp, gc-content ø 0.273
 

 
lp38
length: 38829 bp
gc-content (intragenic): 0.268271 %

 
CDS:
48 genes, length ø 455 bp, gc-content ø 0.268
 
'+'-strand:
24 genes, length ø 509 bp, gc-content ø 0.274
 
'-'-strand:
24 genes, length ø 400 bp, gc-content ø 0.262
 

 
lp5
length: 5228 bp
gc-content (intragenic): 0.238338 %

 
CDS:
6 genes, length ø 616 bp, gc-content ø 0.238
 
'+'-strand:
6 genes, length ø 616 bp, gc-content ø 0.238
 
'-'-strand:
0 genes, length ø 0 bp, gc-content ø 0
Confidence [min/max/avg]: //
Coverage [min/max/avg]: //
 

 
lp54
length: 53561 bp
gc-content (intragenic): 0.29231 %

 
CDS:
76 genes, length ø 587 bp, gc-content ø 0.292
 
'+'-strand:
49 genes, length ø 585 bp, gc-content ø 0.293
 
'-'-strand:
27 genes, length ø 591 bp, gc-content ø 0.29
 

 
lp56
length: 52971 bp
gc-content (intragenic): 0.273961 %

 
CDS:
72 genes, length ø 542 bp, gc-content ø 0.276
 
'+'-strand:
49 genes, length ø 570 bp, gc-content ø 0.289
 
'-'-strand:
23 genes, length ø 481 bp, gc-content ø 0.247
 
pseudo:
8 genes, length ø 344 bp, gc-content ø 0.251
 
'+'-strand:
3 genes, length ø 306 bp, gc-content ø 0.219
 
'-'-strand:
5 genes, length ø 366 bp, gc-content ø 0.27
 

 
Genome featuresCDS:
1639 genes, length ø 795 bp, gc-content ø 0.281
 
'+'-strand:
982 genes, length ø 763 bp, gc-content ø 0.282
 
'-'-strand:
657 genes, length ø 842 bp, gc-content ø 0.279
 
pseudo:
8 genes, length ø 344 bp, gc-content ø 0.251
 
'+'-strand:
3 genes, length ø 306 bp, gc-content ø 0.219
 
'-'-strand:
5 genes, length ø 366 bp, gc-content ø 0.27
 
rRNA:
5 genes, length ø 1523 bp, gc-content ø 0.459
 
'+'-strand:
2 genes, length ø 112 bp, gc-content ø 0.473
 
'-'-strand:
3 genes, length ø 2463 bp, gc-content ø 0.45
 
tRNA:
18 genes, length ø 74 bp, gc-content ø 0.549
 
'+'-strand:
11 genes, length ø 75 bp, gc-content ø 0.542
 
'-'-strand:
7 genes, length ø 73 bp, gc-content ø 0.559
 
COG categories 
Amino acid transport and metabolism [E]33
Carbohydrate transport and metabolism [G]49
Cell cycle control, mitosis and meiosis [D]54
Cell motility [N]74
Cell wall/membrane biogenesis [M]45
Chromatin structure and dynamics [B]0
Coenzyme transport and metabolism [H]10
Cytoskeleton [Z]0
Defense mechanisms [V]0
Energy production and conversion [C]24
Extracellular structures [W]0
Function unknown [S]57
General function prediction only [R]94
Inorganic ion transport and metabolism [P]27
Intracellular trafficking and secretion [U]0
Lipid transport and metabolism [I]14
NOT ANALYZED31
Nuclear structure [Y]0
Nucleotide transport and metabolism [F]27
Posttranslational modification, protein turnover, chaperones [O]29
RNA processing and modification [A]0
Replication, recombination and repair [L]72
Secondary metabolites biosynthesis, transport and catabolism [Q]9
Signal transduction mechanisms [T]14
Transcription [K]21
Translation, ribosomal structure and biogenesis [J]117
Unclassified [-]878