Leptospira biflexa serovar Patoc strain Patoc 1 (Ames), Patoc 1 (Ames) | |
---|---|
Genomic elements | 2 chromosomes(s), 1 circular plasmid(s) Hide details chromosome I length: 3603977 bp gc-content (intragenic): 0.391 % CDS: 3277 genes, length ø 1016 bp, gc-content ø 0.388 '+'-strand: 1680 genes, length ø 1000 bp, gc-content ø 0.387 '-'-strand: 1597 genes, length ø 1031 bp, gc-content ø 0.39 pseudo: 33 genes, length ø 946 bp, gc-content ø 0.386 '+'-strand: 16 genes, length ø 980 bp, gc-content ø 0.377 '-'-strand: 17 genes, length ø 913 bp, gc-content ø 0.395 rRNA: 6 genes, length ø 1498 bp, gc-content ø 0.52 '+'-strand: 3 genes, length ø 577 bp, gc-content ø 0.528 '-'-strand: 3 genes, length ø 2419 bp, gc-content ø 0.512 tRNA: 35 genes, length ø 76 bp, gc-content ø 0.57 '+'-strand: 19 genes, length ø 76 bp, gc-content ø 0.579 '-'-strand: 16 genes, length ø 76 bp, gc-content ø 0.56 chromosome II length: 277995 bp gc-content (intragenic): 0.392303 % CDS: 266 genes, length ø 973 bp, gc-content ø 0.392 '+'-strand: 123 genes, length ø 884 bp, gc-content ø 0.387 '-'-strand: 143 genes, length ø 1049 bp, gc-content ø 0.395 pseudo: 1 genes, length ø 1762 bp, gc-content ø 0.444 '+'-strand: 1 genes, length ø 1762 bp, gc-content ø 0.444 '-'-strand: 0 genes, length ø 0 bp, gc-content ø 0 Confidence [min/max/avg]: // Coverage [min/max/avg]: // p74 length: 74117 bp gc-content (intragenic): 0.375348 % CDS: 57 genes, length ø 1185 bp, gc-content ø 0.375 '+'-strand: 31 genes, length ø 958 bp, gc-content ø 0.372 '-'-strand: 26 genes, length ø 1456 bp, gc-content ø 0.378 |
Genome features | CDS: 3600 genes, length ø 1015 bp, gc-content ø 0.388 '+'-strand: 1834 genes, length ø 992 bp, gc-content ø 0.386 '-'-strand: 1766 genes, length ø 1039 bp, gc-content ø 0.39 pseudo: 34 genes, length ø 970 bp, gc-content ø 0.388 '+'-strand: 17 genes, length ø 1026 bp, gc-content ø 0.381 '-'-strand: 17 genes, length ø 913 bp, gc-content ø 0.395 rRNA: 6 genes, length ø 1498 bp, gc-content ø 0.52 '+'-strand: 3 genes, length ø 577 bp, gc-content ø 0.528 '-'-strand: 3 genes, length ø 2419 bp, gc-content ø 0.512 tRNA: 35 genes, length ø 76 bp, gc-content ø 0.57 '+'-strand: 19 genes, length ø 76 bp, gc-content ø 0.579 '-'-strand: 16 genes, length ø 76 bp, gc-content ø 0.56 |
COG categories | |
Amino acid transport and metabolism [E] | 184 |
Carbohydrate transport and metabolism [G] | 104 |
Cell cycle control, mitosis and meiosis [D] | 25 |
Cell motility [N] | 144 |
Cell wall/membrane biogenesis [M] | 206 |
Chromatin structure and dynamics [B] | 0 |
Coenzyme transport and metabolism [H] | 107 |
Cytoskeleton [Z] | 0 |
Defense mechanisms [V] | 0 |
Energy production and conversion [C] | 146 |
Extracellular structures [W] | 0 |
Function unknown [S] | 132 |
General function prediction only [R] | 420 |
Inorganic ion transport and metabolism [P] | 135 |
Intracellular trafficking and secretion [U] | 0 |
Lipid transport and metabolism [I] | 95 |
NOT ANALYZED | 75 |
Nuclear structure [Y] | 0 |
Nucleotide transport and metabolism [F] | 49 |
Posttranslational modification, protein turnover, chaperones [O] | 107 |
RNA processing and modification [A] | 0 |
Replication, recombination and repair [L] | 103 |
Secondary metabolites biosynthesis, transport and catabolism [Q] | 99 |
Signal transduction mechanisms [T] | 262 |
Transcription [K] | 180 |
Translation, ribosomal structure and biogenesis [J] | 151 |
Unclassified [-] | 1224 |