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2024-04-28 15:07:22
Summary for Leptospira biflexa serovar Patoc strain Patoc 1 (Paris), Patoc 1 (Paris).
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chr: chromosome(s), pl: plasmid(s), seg: segment(s)
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 Leptospira biflexa serovar Patoc strain Patoc 1 (Paris), Patoc 1 (Paris)
Genomic elements2 chromosomes(s), 1 circular plasmid(s)
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Genome featuresCDS:
3726 genes, length ø 987 bp, gc-content ø 0.388
 
'+'-strand:
1898 genes, length ø 966 bp, gc-content ø 0.386
 
'-'-strand:
1828 genes, length ø 1009 bp, gc-content ø 0.389
 
misc_RNA:
3 genes, length ø 131 bp, gc-content ø 0.457
 
'+'-strand:
0 genes, length ø 0 bp, gc-content ø 0
 
'-'-strand:
3 genes, length ø 131 bp, gc-content ø 0.457
 
pseudo:
4 genes, length ø 620 bp, gc-content ø 0.412
 
'+'-strand:
1 genes, length ø 372 bp, gc-content ø 0.352
 
'-'-strand:
3 genes, length ø 703 bp, gc-content ø 0.433
 
rRNA:
6 genes, length ø 1439 bp, gc-content ø 0.52
 
'+'-strand:
4 genes, length ø 695 bp, gc-content ø 0.525
 
'-'-strand:
2 genes, length ø 2928 bp, gc-content ø 0.51
 
tRNA:
35 genes, length ø 76 bp, gc-content ø 0.57
 
'+'-strand:
19 genes, length ø 76 bp, gc-content ø 0.578
 
'-'-strand:
16 genes, length ø 76 bp, gc-content ø 0.56
 
tmRNA:
1 genes, length ø 349 bp, gc-content ø 0.481
 
'+'-strand:
0 genes, length ø 0 bp, gc-content ø 0
 
'-'-strand:
1 genes, length ø 349 bp, gc-content ø 0.481
 
COG categories 
Amino acid transport and metabolism [E]184
Carbohydrate transport and metabolism [G]104
Cell cycle control, mitosis and meiosis [D]26
Cell motility [N]143
Cell wall/membrane biogenesis [M]207
Chromatin structure and dynamics [B]0
Coenzyme transport and metabolism [H]107
Cytoskeleton [Z]0
Defense mechanisms [V]0
Energy production and conversion [C]148
Extracellular structures [W]0
Function unknown [S]133
General function prediction only [R]421
Inorganic ion transport and metabolism [P]135
Intracellular trafficking and secretion [U]0
Lipid transport and metabolism [I]96
NOT ANALYZED49
Nuclear structure [Y]0
Nucleotide transport and metabolism [F]49
Posttranslational modification, protein turnover, chaperones [O]106
RNA processing and modification [A]0
Replication, recombination and repair [L]105
Secondary metabolites biosynthesis, transport and catabolism [Q]99
Signal transduction mechanisms [T]267
Transcription [K]187
Translation, ribosomal structure and biogenesis [J]149
Unclassified [-]1336