SGB - The Spirochetes Genome Browser - Summary for Leptospira biflexa serovar Patoc strain Patoc 1 (Paris), Patoc 1 (Paris).

	Leptospira biflexa serovar Patoc strain Patoc 1 (Paris), Patoc 1 (Paris)
Genomic elements	2 chromosomes(s), 1 circular plasmid(s) Hide details chromosome I length: 3599677 bp gc-content (intragenic): 0.390399 % CDS: 3391 genes, length ø 987 bp, gc-content ø 0.388 '+'-strand: 1740 genes, length ø 973 bp, gc-content ø 0.386 '-'-strand: 1651 genes, length ø 1003 bp, gc-content ø 0.389 misc_RNA: 3 genes, length ø 131 bp, gc-content ø 0.457 '+'-strand: 0 genes, length ø 0 bp, gc-content ø 0 Confidence [min/max/avg]: // Coverage [min/max/avg]: // '-'-strand: 3 genes, length ø 131 bp, gc-content ø 0.457 pseudo: 4 genes, length ø 620 bp, gc-content ø 0.412 '+'-strand: 1 genes, length ø 372 bp, gc-content ø 0.352 '-'-strand: 3 genes, length ø 703 bp, gc-content ø 0.433 rRNA: 6 genes, length ø 1439 bp, gc-content ø 0.52 '+'-strand: 4 genes, length ø 695 bp, gc-content ø 0.525 '-'-strand: 2 genes, length ø 2928 bp, gc-content ø 0.51 tRNA: 35 genes, length ø 76 bp, gc-content ø 0.57 '+'-strand: 19 genes, length ø 76 bp, gc-content ø 0.578 '-'-strand: 16 genes, length ø 76 bp, gc-content ø 0.56 tmRNA: 1 genes, length ø 349 bp, gc-content ø 0.481 '+'-strand: 0 genes, length ø 0 bp, gc-content ø 0 Confidence [min/max/avg]: // Coverage [min/max/avg]: // '-'-strand: 1 genes, length ø 349 bp, gc-content ø 0.481 chromosome II length: 277655 bp gc-content (intragenic): 0.391689 % CDS: 276 genes, length ø 946 bp, gc-content ø 0.391 '+'-strand: 127 genes, length ø 871 bp, gc-content ø 0.387 '-'-strand: 149 genes, length ø 1011 bp, gc-content ø 0.394 p74 length: 74116 bp gc-content (intragenic): 0.372172 % CDS: 59 genes, length ø 1152 bp, gc-content ø 0.372 '+'-strand: 31 genes, length ø 957 bp, gc-content ø 0.369 '-'-strand: 28 genes, length ø 1369 bp, gc-content ø 0.375
Genome features	CDS: 3726 genes, length ø 987 bp, gc-content ø 0.388 '+'-strand: 1898 genes, length ø 966 bp, gc-content ø 0.386 '-'-strand: 1828 genes, length ø 1009 bp, gc-content ø 0.389 misc_RNA: 3 genes, length ø 131 bp, gc-content ø 0.457 '+'-strand: 0 genes, length ø 0 bp, gc-content ø 0 '-'-strand: 3 genes, length ø 131 bp, gc-content ø 0.457 pseudo: 4 genes, length ø 620 bp, gc-content ø 0.412 '+'-strand: 1 genes, length ø 372 bp, gc-content ø 0.352 '-'-strand: 3 genes, length ø 703 bp, gc-content ø 0.433 rRNA: 6 genes, length ø 1439 bp, gc-content ø 0.52 '+'-strand: 4 genes, length ø 695 bp, gc-content ø 0.525 '-'-strand: 2 genes, length ø 2928 bp, gc-content ø 0.51 tRNA: 35 genes, length ø 76 bp, gc-content ø 0.57 '+'-strand: 19 genes, length ø 76 bp, gc-content ø 0.578 '-'-strand: 16 genes, length ø 76 bp, gc-content ø 0.56 tmRNA: 1 genes, length ø 349 bp, gc-content ø 0.481 '+'-strand: 0 genes, length ø 0 bp, gc-content ø 0 '-'-strand: 1 genes, length ø 349 bp, gc-content ø 0.481
COG categories
Amino acid transport and metabolism [E]	184
Carbohydrate transport and metabolism [G]	104
Cell cycle control, mitosis and meiosis [D]	26
Cell motility [N]	143
Cell wall/membrane biogenesis [M]	207
Chromatin structure and dynamics [B]	0
Coenzyme transport and metabolism [H]	107
Cytoskeleton [Z]	0
Defense mechanisms [V]	0
Energy production and conversion [C]	148
Extracellular structures [W]	0
Function unknown [S]	133
General function prediction only [R]	421
Inorganic ion transport and metabolism [P]	135
Intracellular trafficking and secretion [U]	0
Lipid transport and metabolism [I]	96
NOT ANALYZED	49
Nuclear structure [Y]	0
Nucleotide transport and metabolism [F]	49
Posttranslational modification, protein turnover, chaperones [O]	106
RNA processing and modification [A]	0
Replication, recombination and repair [L]	105
Secondary metabolites biosynthesis, transport and catabolism [Q]	99
Signal transduction mechanisms [T]	267
Transcription [K]	187
Translation, ribosomal structure and biogenesis [J]	149
Unclassified [-]	1336