SGB - The Spirochetes Genome Browser - Summary for Leptospira interrogans serovar lai str. 56601.

Title

+ Borrelia afzelii, PKo

+ Borrelia burgdorferi ZS7, ZS7

+ Borrelia burgdorferi, B31

+ Borrelia duttonii Ly, Ly

+ Borrelia garinii High passage (300), PBi

+ Borrelia garinii, PBi

+ Borrelia hermsii DAH, DAH

+ Borrelia recurrentis A1, A1

+ Borrelia turicatae 91E135, 91E135

+ Leptospira biflexa serovar Patoc strain Patoc 1 (Ames), Patoc 1 (Ames)

+ Leptospira biflexa serovar Patoc strain Patoc 1 (Paris), Patoc 1 (Paris)

+ Leptospira borgpetersenii serovar Hardjo-bovis JB197, JB197

+ Leptospira borgpetersenii serovar Hardjo-bovis L550, L550

+ Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130

+ Leptospira interrogans serovar lai str. 56601

+ Treponema denticola ATCC 35405

+ Treponema pallidum

+ Treponema pallidum subsp. pallidum SS14, SS14

+ COG functional categories

+ (Clickable) linear whole genome views

+ Horizontal gene transfer (predicted by SIGI-HMM)

+ Sequence retrieval

+ Advanced search

+ Sequence similarity search

+ Best bidirectional hits (protein-based analysis)

+ Gene core sets (protein-based analysis)

+ Gene partnerships (DNA-based analysis)

+ Protein variations (protein-based analysis)

+ Synteny analysis (protein-based analysis)

+ Gene conservation (protein-based analysis)

+ Codon and amino acid usages (DNA- and protein-based analysis)

+ Alignments of whole reference and target genomic elements (DNA-based analysis)

Summary for Leptospira interrogans serovar lai str. 56601.

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chr: chromosome(s), pl: plasmid(s), seg: segment(s)

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	Leptospira interrogans serovar lai str. 56601
Genomic elements	2 chromosomes(s) Show details
Genome features	CDS: 4727 genes, length ø 777 bp, gc-content ø 0.35 '+'-strand: 2456 genes, length ø 799 bp, gc-content ø 0.351 '-'-strand: 2271 genes, length ø 754 bp, gc-content ø 0.348 rRNA: 4 genes, length ø 1511 bp, gc-content ø 0.534 '+'-strand: 2 genes, length ø 1514 bp, gc-content ø 0.54 '-'-strand: 2 genes, length ø 1509 bp, gc-content ø 0.528 tRNA: 37 genes, length ø 76 bp, gc-content ø 0.566 '+'-strand: 16 genes, length ø 76 bp, gc-content ø 0.563 '-'-strand: 21 genes, length ø 75 bp, gc-content ø 0.569
COG categories
Amino acid transport and metabolism [E]	210
Carbohydrate transport and metabolism [G]	131
Cell cycle control, mitosis and meiosis [D]	54
Cell motility [N]	102
Cell wall/membrane biogenesis [M]	228
Chromatin structure and dynamics [B]	2
Coenzyme transport and metabolism [H]	114
Cytoskeleton [Z]	3
Defense mechanisms [V]	49
Energy production and conversion [C]	145
Extracellular structures [W]	3
Function unknown [S]	219
General function prediction only [R]	479
Inorganic ion transport and metabolism [P]	134
Intracellular trafficking and secretion [U]	68
Lipid transport and metabolism [I]	110
NOT ANALYZED	41
Nuclear structure [Y]	0
Nucleotide transport and metabolism [F]	59
Posttranslational modification, protein turnover, chaperones [O]	118
RNA processing and modification [A]	0
Replication, recombination and repair [L]	228
Secondary metabolites biosynthesis, transport and catabolism [Q]	61
Signal transduction mechanisms [T]	233
Transcription [K]	127
Translation, ribosomal structure and biogenesis [J]	172
Unclassified [-]	2060