SGB - The Spirochetes Genome Browser - Summary for Borrelia duttonii Ly, Ly.

	Borrelia duttonii Ly, Ly
Genomic elements	1 chromosomes(s), 15 linear plasmid(s), 1 circular plasmid(s) Hide details chromosome length: 931674 bp gc-content (intragenic): 0.28882 % CDS: 820 genes, length ø 1060 bp, gc-content ø 0.277 '+'-strand: 413 genes, length ø 1064 bp, gc-content ø 0.278 '-'-strand: 407 genes, length ø 1057 bp, gc-content ø 0.276 pseudo: 2 genes, length ø 906 bp, gc-content ø 0.385 '+'-strand: 0 genes, length ø 0 bp, gc-content ø 0 Confidence [min/max/avg]: // Coverage [min/max/avg]: // '-'-strand: 2 genes, length ø 906 bp, gc-content ø 0.385 rRNA: 3 genes, length ø 1532 bp, gc-content ø 0.46 '+'-strand: 0 genes, length ø 0 bp, gc-content ø 0 Confidence [min/max/avg]: // Coverage [min/max/avg]: // '-'-strand: 3 genes, length ø 1532 bp, gc-content ø 0.46 tRNA: 32 genes, length ø 76 bp, gc-content ø 0.554 '+'-strand: 20 genes, length ø 77 bp, gc-content ø 0.55 '-'-strand: 12 genes, length ø 74 bp, gc-content ø 0.56 tmRNA: 1 genes, length ø 364 bp, gc-content ø 0.324 '+'-strand: 0 genes, length ø 0 bp, gc-content ø 0 Confidence [min/max/avg]: // Coverage [min/max/avg]: // '-'-strand: 1 genes, length ø 364 bp, gc-content ø 0.324 pl11 length: 11226 bp gc-content (intragenic): 0.277128 % CDS: 8 genes, length ø 831 bp, gc-content ø 0.277 '+'-strand: 4 genes, length ø 804 bp, gc-content ø 0.291 '-'-strand: 4 genes, length ø 858 bp, gc-content ø 0.262 pl15 length: 15049 bp gc-content (intragenic): 0.296806 % CDS: 13 genes, length ø 780 bp, gc-content ø 0.289 '+'-strand: 10 genes, length ø 729 bp, gc-content ø 0.29 '-'-strand: 3 genes, length ø 947 bp, gc-content ø 0.283 pseudo: 1 genes, length ø 795 bp, gc-content ø 0.396 '+'-strand: 1 genes, length ø 795 bp, gc-content ø 0.396 '-'-strand: 0 genes, length ø 0 bp, gc-content ø 0 Confidence [min/max/avg]: // Coverage [min/max/avg]: // pl165 length: 163884 bp gc-content (intragenic): 0.282234 % CDS: 134 genes, length ø 897 bp, gc-content ø 0.283 '+'-strand: 37 genes, length ø 1059 bp, gc-content ø 0.277 '-'-strand: 97 genes, length ø 835 bp, gc-content ø 0.285 pseudo: 10 genes, length ø 976 bp, gc-content ø 0.264 '+'-strand: 6 genes, length ø 1244 bp, gc-content ø 0.266 '-'-strand: 4 genes, length ø 576 bp, gc-content ø 0.261 pl23 length: 23303 bp gc-content (intragenic): 0.270517 % CDS: 21 genes, length ø 822 bp, gc-content ø 0.267 '+'-strand: 10 genes, length ø 869 bp, gc-content ø 0.279 '-'-strand: 11 genes, length ø 781 bp, gc-content ø 0.255 pseudo: 1 genes, length ø 417 bp, gc-content ø 0.338 '+'-strand: 0 genes, length ø 0 bp, gc-content ø 0 Confidence [min/max/avg]: // Coverage [min/max/avg]: // '-'-strand: 1 genes, length ø 417 bp, gc-content ø 0.338 pl23b length: 23036 bp gc-content (intragenic): 0.322036 % CDS: 12 genes, length ø 1016 bp, gc-content ø 0.308 '+'-strand: 7 genes, length ø 999 bp, gc-content ø 0.354 '-'-strand: 5 genes, length ø 1040 bp, gc-content ø 0.242 pseudo: 3 genes, length ø 890 bp, gc-content ø 0.377 '+'-strand: 3 genes, length ø 890 bp, gc-content ø 0.377 '-'-strand: 0 genes, length ø 0 bp, gc-content ø 0 Confidence [min/max/avg]: // Coverage [min/max/avg]: // pl26 length: 26917 bp gc-content (intragenic): 0.296897 % CDS: 34 genes, length ø 703 bp, gc-content ø 0.296 '+'-strand: 32 genes, length ø 709 bp, gc-content ø 0.298 '-'-strand: 2 genes, length ø 600 bp, gc-content ø 0.272 pl27 length: 27476 bp gc-content (intragenic): 0.290758 % CDS: 35 genes, length ø 670 bp, gc-content ø 0.289 '+'-strand: 28 genes, length ø 655 bp, gc-content ø 0.297 '-'-strand: 7 genes, length ø 729 bp, gc-content ø 0.261 pseudo: 1 genes, length ø 1041 bp, gc-content ø 0.321 '+'-strand: 1 genes, length ø 1041 bp, gc-content ø 0.321 '-'-strand: 0 genes, length ø 0 bp, gc-content ø 0 Confidence [min/max/avg]: // Coverage [min/max/avg]: // pl28 length: 28343 bp gc-content (intragenic): 0.295319 % CDS: 36 genes, length ø 718 bp, gc-content ø 0.295 '+'-strand: 29 genes, length ø 709 bp, gc-content ø 0.305 '-'-strand: 7 genes, length ø 755 bp, gc-content ø 0.254 pl31 length: 31021 bp gc-content (intragenic): 0.287026 % CDS: 20 genes, length ø 696 bp, gc-content ø 0.286 '+'-strand: 10 genes, length ø 712 bp, gc-content ø 0.299 '-'-strand: 10 genes, length ø 679 bp, gc-content ø 0.273 pseudo: 13 genes, length ø 661 bp, gc-content ø 0.287 '+'-strand: 8 genes, length ø 630 bp, gc-content ø 0.283 '-'-strand: 5 genes, length ø 709 bp, gc-content ø 0.294 pl32 length: 31663 bp gc-content (intragenic): 0.316274 % CDS: 22 genes, length ø 691 bp, gc-content ø 0.302 '+'-strand: 7 genes, length ø 572 bp, gc-content ø 0.298 '-'-strand: 15 genes, length ø 747 bp, gc-content ø 0.305 pseudo: 9 genes, length ø 830 bp, gc-content ø 0.348 '+'-strand: 3 genes, length ø 680 bp, gc-content ø 0.309 '-'-strand: 6 genes, length ø 905 bp, gc-content ø 0.368 pl35 length: 35286 bp gc-content (intragenic): 0.339425 % CDS: 19 genes, length ø 898 bp, gc-content ø 0.328 '+'-strand: 2 genes, length ø 1099 bp, gc-content ø 0.302 '-'-strand: 17 genes, length ø 874 bp, gc-content ø 0.331 pseudo: 13 genes, length ø 681 bp, gc-content ø 0.355 '+'-strand: 0 genes, length ø 0 bp, gc-content ø 0 Confidence [min/max/avg]: // Coverage [min/max/avg]: // '-'-strand: 13 genes, length ø 681 bp, gc-content ø 0.355 pl36 length: 35831 bp gc-content (intragenic): 0.321534 % CDS: 20 genes, length ø 833 bp, gc-content ø 0.305 '+'-strand: 13 genes, length ø 751 bp, gc-content ø 0.285 '-'-strand: 7 genes, length ø 987 bp, gc-content ø 0.341 pseudo: 6 genes, length ø 726 bp, gc-content ø 0.376 '+'-strand: 1 genes, length ø 881 bp, gc-content ø 0.397 '-'-strand: 5 genes, length ø 695 bp, gc-content ø 0.372 pl40 length: 40353 bp gc-content (intragenic): 0.325244 % CDS: 18 genes, length ø 885 bp, gc-content ø 0.325 '+'-strand: 11 genes, length ø 909 bp, gc-content ø 0.315 '-'-strand: 7 genes, length ø 847 bp, gc-content ø 0.34 pseudo: 24 genes, length ø 559 bp, gc-content ø 0.325 '+'-strand: 12 genes, length ø 477 bp, gc-content ø 0.324 '-'-strand: 12 genes, length ø 641 bp, gc-content ø 0.326 pl41 length: 41259 bp gc-content (intragenic): 0.304246 % CDS: 28 genes, length ø 775 bp, gc-content ø 0.303 '+'-strand: 13 genes, length ø 795 bp, gc-content ø 0.331 '-'-strand: 15 genes, length ø 759 bp, gc-content ø 0.28 pseudo: 10 genes, length ø 902 bp, gc-content ø 0.305 '+'-strand: 6 genes, length ø 865 bp, gc-content ø 0.294 '-'-strand: 4 genes, length ø 957 bp, gc-content ø 0.321 pl42 length: 42153 bp gc-content (intragenic): 0.315415 % CDS: 20 genes, length ø 827 bp, gc-content ø 0.312 '+'-strand: 9 genes, length ø 864 bp, gc-content ø 0.337 '-'-strand: 11 genes, length ø 797 bp, gc-content ø 0.291 pseudo: 19 genes, length ø 616 bp, gc-content ø 0.318 '+'-strand: 11 genes, length ø 650 bp, gc-content ø 0.322 '-'-strand: 8 genes, length ø 570 bp, gc-content ø 0.312 pl70 length: 66407 bp gc-content (intragenic): 0.318081 % CDS: 45 genes, length ø 886 bp, gc-content ø 0.317 '+'-strand: 19 genes, length ø 848 bp, gc-content ø 0.32 '-'-strand: 26 genes, length ø 914 bp, gc-content ø 0.315 pseudo: 16 genes, length ø 641 bp, gc-content ø 0.319 '+'-strand: 9 genes, length ø 744 bp, gc-content ø 0.348 '-'-strand: 7 genes, length ø 509 bp, gc-content ø 0.281
Genome features	CDS: 1305 genes, length ø 970 bp, gc-content ø 0.284 '+'-strand: 654 genes, length ø 969 bp, gc-content ø 0.287 '-'-strand: 651 genes, length ø 971 bp, gc-content ø 0.281 pseudo: 128 genes, length ø 704 bp, gc-content ø 0.323 '+'-strand: 61 genes, length ø 733 bp, gc-content ø 0.318 '-'-strand: 67 genes, length ø 679 bp, gc-content ø 0.328 rRNA: 3 genes, length ø 1532 bp, gc-content ø 0.46 '+'-strand: 0 genes, length ø 0 bp, gc-content ø 0 '-'-strand: 3 genes, length ø 1532 bp, gc-content ø 0.46 tRNA: 32 genes, length ø 76 bp, gc-content ø 0.554 '+'-strand: 20 genes, length ø 77 bp, gc-content ø 0.55 '-'-strand: 12 genes, length ø 74 bp, gc-content ø 0.56 tmRNA: 1 genes, length ø 364 bp, gc-content ø 0.324 '+'-strand: 0 genes, length ø 0 bp, gc-content ø 0 '-'-strand: 1 genes, length ø 364 bp, gc-content ø 0.324
COG categories
Amino acid transport and metabolism [E]	34
Carbohydrate transport and metabolism [G]	42
Cell cycle control, mitosis and meiosis [D]	50
Cell motility [N]	91
Cell wall/membrane biogenesis [M]	45
Chromatin structure and dynamics [B]	0
Coenzyme transport and metabolism [H]	15
Cytoskeleton [Z]	0
Defense mechanisms [V]	0
Energy production and conversion [C]	22
Extracellular structures [W]	0
Function unknown [S]	47
General function prediction only [R]	88
Inorganic ion transport and metabolism [P]	27
Intracellular trafficking and secretion [U]	0
Lipid transport and metabolism [I]	16
NOT ANALYZED	164
Nuclear structure [Y]	0
Nucleotide transport and metabolism [F]	31
Posttranslational modification, protein turnover, chaperones [O]	35
RNA processing and modification [A]	0
Replication, recombination and repair [L]	72
Secondary metabolites biosynthesis, transport and catabolism [Q]	9
Signal transduction mechanisms [T]	19
Transcription [K]	25
Translation, ribosomal structure and biogenesis [J]	114
Unclassified [-]	559