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2024-05-13 18:08:09
Summary for Borrelia burgdorferi ZS7, ZS7.
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chr: chromosome(s), pl: plasmid(s), seg: segment(s)
Free access

 

 Borrelia burgdorferi ZS7, ZS7
Genomic elements1 chromosomes(s), 8 linear plasmid(s), 6 circular plasmid(s)
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ZS7_cp26
length: 26514 bp
gc-content (intragenic): 0.257138 %

 
CDS:
25 genes, length ø 822 bp, gc-content ø 0.256
 
'+'-strand:
13 genes, length ø 759 bp, gc-content ø 0.249
 
'-'-strand:
12 genes, length ø 890 bp, gc-content ø 0.263
 
pseudo:
3 genes, length ø 846 bp, gc-content ø 0.263
 
'+'-strand:
2 genes, length ø 954 bp, gc-content ø 0.283
 
'-'-strand:
1 genes, length ø 630 bp, gc-content ø 0.222
 

 
ZS7_cp32-1
length: 30330 bp
gc-content (intragenic): 0.293302 %

 
CDS:
36 genes, length ø 656 bp, gc-content ø 0.295
 
'+'-strand:
34 genes, length ø 644 bp, gc-content ø 0.297
 
'-'-strand:
2 genes, length ø 862 bp, gc-content ø 0.266
 
pseudo:
8 genes, length ø 543 bp, gc-content ø 0.282
 
'+'-strand:
8 genes, length ø 543 bp, gc-content ø 0.282
 
'-'-strand:
0 genes, length ø 0 bp, gc-content ø 0
Confidence [min/max/avg]: //
Coverage [min/max/avg]: //
 

 
ZS7_cp32-12
length: 29806 bp
gc-content (intragenic): 0.29761 %

 
CDS:
39 genes, length ø 637 bp, gc-content ø 0.297
 
'+'-strand:
36 genes, length ø 627 bp, gc-content ø 0.298
 
'-'-strand:
3 genes, length ø 759 bp, gc-content ø 0.282
 
pseudo:
2 genes, length ø 1290 bp, gc-content ø 0.303
 
'+'-strand:
2 genes, length ø 1290 bp, gc-content ø 0.303
 
'-'-strand:
0 genes, length ø 0 bp, gc-content ø 0
Confidence [min/max/avg]: //
Coverage [min/max/avg]: //
 

 
ZS7_cp32-3+10
length: 48168 bp
gc-content (intragenic): 0.282144 %

 
CDS:
60 genes, length ø 659 bp, gc-content ø 0.282
 
'+'-strand:
57 genes, length ø 650 bp, gc-content ø 0.282
 
'-'-strand:
3 genes, length ø 821 bp, gc-content ø 0.273
 
pseudo:
7 genes, length ø 540 bp, gc-content ø 0.281
 
'+'-strand:
6 genes, length ø 541 bp, gc-content ø 0.278
 
'-'-strand:
1 genes, length ø 540 bp, gc-content ø 0.296
 

 
ZS7_cp32-4
length: 30964 bp
gc-content (intragenic): 0.291754 %

 
CDS:
40 genes, length ø 638 bp, gc-content ø 0.292
 
'+'-strand:
37 genes, length ø 640 bp, gc-content ø 0.295
 
'-'-strand:
3 genes, length ø 613 bp, gc-content ø 0.251
 
pseudo:
3 genes, length ø 1003 bp, gc-content ø 0.279
 
'+'-strand:
3 genes, length ø 1003 bp, gc-content ø 0.279
 
'-'-strand:
0 genes, length ø 0 bp, gc-content ø 0
Confidence [min/max/avg]: //
Coverage [min/max/avg]: //
 

 
ZS7_cp32-9
length: 30467 bp
gc-content (intragenic): 0.29659 %

 
CDS:
35 genes, length ø 603 bp, gc-content ø 0.295
 
'+'-strand:
34 genes, length ø 598 bp, gc-content ø 0.296
 
'-'-strand:
1 genes, length ø 777 bp, gc-content ø 0.249
 
pseudo:
11 genes, length ø 567 bp, gc-content ø 0.301
 
'+'-strand:
9 genes, length ø 594 bp, gc-content ø 0.304
 
'-'-strand:
2 genes, length ø 444 bp, gc-content ø 0.284
 

 
ZS7_lp17
length: 17266 bp
gc-content (intragenic): 0.24941 %

 
CDS:
14 genes, length ø 500 bp, gc-content ø 0.25
 
'+'-strand:
10 genes, length ø 534 bp, gc-content ø 0.243
 
'-'-strand:
4 genes, length ø 414 bp, gc-content ø 0.267
 
pseudo:
2 genes, length ø 345 bp, gc-content ø 0.243
 
'+'-strand:
2 genes, length ø 345 bp, gc-content ø 0.243
 
'-'-strand:
0 genes, length ø 0 bp, gc-content ø 0
Confidence [min/max/avg]: //
Coverage [min/max/avg]: //
 

 
ZS7_lp25
length: 24326 bp
gc-content (intragenic): 0.251187 %

 
CDS:
17 genes, length ø 647 bp, gc-content ø 0.257
 
'+'-strand:
2 genes, length ø 502 bp, gc-content ø 0.272
 
'-'-strand:
15 genes, length ø 667 bp, gc-content ø 0.255
 
pseudo:
7 genes, length ø 222 bp, gc-content ø 0.236
 
'+'-strand:
5 genes, length ø 199 bp, gc-content ø 0.238
 
'-'-strand:
2 genes, length ø 279 bp, gc-content ø 0.23
 

 
ZS7_lp28-1
length: 23422 bp
gc-content (intragenic): 0.299826 %

 
CDS:
13 genes, length ø 450 bp, gc-content ø 0.263
 
'+'-strand:
12 genes, length ø 421 bp, gc-content ø 0.264
 
'-'-strand:
1 genes, length ø 801 bp, gc-content ø 0.252
 
pseudo:
15 genes, length ø 695 bp, gc-content ø 0.331
 
'+'-strand:
10 genes, length ø 706 bp, gc-content ø 0.374
 
'-'-strand:
5 genes, length ø 672 bp, gc-content ø 0.244
 

 
ZS7_lp28-2
length: 29758 bp
gc-content (intragenic): 0.318142 %

 
CDS:
31 genes, length ø 800 bp, gc-content ø 0.32
 
'+'-strand:
11 genes, length ø 744 bp, gc-content ø 0.294
 
'-'-strand:
20 genes, length ø 832 bp, gc-content ø 0.334
 
pseudo:
4 genes, length ø 579 bp, gc-content ø 0.299
 
'+'-strand:
2 genes, length ø 597 bp, gc-content ø 0.338
 
'-'-strand:
2 genes, length ø 561 bp, gc-content ø 0.26
 

 
ZS7_lp28-3
length: 28414 bp
gc-content (intragenic): 0.254869 %

 
CDS:
22 genes, length ø 631 bp, gc-content ø 0.258
 
'+'-strand:
10 genes, length ø 762 bp, gc-content ø 0.268
 
'-'-strand:
12 genes, length ø 522 bp, gc-content ø 0.25
 
pseudo:
4 genes, length ø 162 bp, gc-content ø 0.233
 
'+'-strand:
3 genes, length ø 146 bp, gc-content ø 0.203
 
'-'-strand:
1 genes, length ø 210 bp, gc-content ø 0.323
 

 
ZS7_lp28-4
length: 28885 bp
gc-content (intragenic): 0.259931 %

 
CDS:
21 genes, length ø 611 bp, gc-content ø 0.264
 
'+'-strand:
13 genes, length ø 618 bp, gc-content ø 0.249
 
'-'-strand:
8 genes, length ø 601 bp, gc-content ø 0.288
 
pseudo:
9 genes, length ø 403 bp, gc-content ø 0.249
 
'+'-strand:
8 genes, length ø 359 bp, gc-content ø 0.244
 
'-'-strand:
1 genes, length ø 753 bp, gc-content ø 0.288
 

 
ZS7_lp36
length: 36852 bp
gc-content (intragenic): 0.274075 %

 
CDS:
23 genes, length ø 610 bp, gc-content ø 0.272
 
'+'-strand:
10 genes, length ø 589 bp, gc-content ø 0.258
 
'-'-strand:
13 genes, length ø 626 bp, gc-content ø 0.283
 
pseudo:
21 genes, length ø 415 bp, gc-content ø 0.275
 
'+'-strand:
9 genes, length ø 389 bp, gc-content ø 0.282
 
'-'-strand:
12 genes, length ø 434 bp, gc-content ø 0.27
 

 
ZS7_lp54
length: 53615 bp
gc-content (intragenic): 0.294881 %

 
CDS:
55 genes, length ø 674 bp, gc-content ø 0.294
 
'+'-strand:
36 genes, length ø 611 bp, gc-content ø 0.293
 
'-'-strand:
19 genes, length ø 793 bp, gc-content ø 0.297
 
pseudo:
11 genes, length ø 554 bp, gc-content ø 0.295
 
'+'-strand:
8 genes, length ø 703 bp, gc-content ø 0.296
 
'-'-strand:
3 genes, length ø 157 bp, gc-content ø 0.294
 

 
chromosome
length: 906707 bp
gc-content (intragenic): 0.295565 %

 
CDS:
808 genes, length ø 1021 bp, gc-content ø 0.285
 
'+'-strand:
398 genes, length ø 1031 bp, gc-content ø 0.286
 
'-'-strand:
410 genes, length ø 1012 bp, gc-content ø 0.285
 
ncRNA:
2 genes, length ø 194 bp, gc-content ø 0.423
 
'+'-strand:
2 genes, length ø 194 bp, gc-content ø 0.423
 
'-'-strand:
0 genes, length ø 0 bp, gc-content ø 0
Confidence [min/max/avg]: //
Coverage [min/max/avg]: //
 
pseudo:
30 genes, length ø 729 bp, gc-content ø 0.286
 
'+'-strand:
17 genes, length ø 753 bp, gc-content ø 0.27
 
'-'-strand:
13 genes, length ø 697 bp, gc-content ø 0.308
 
rRNA:
3 genes, length ø 1527 bp, gc-content ø 0.458
 
'+'-strand:
0 genes, length ø 0 bp, gc-content ø 0
Confidence [min/max/avg]: //
Coverage [min/max/avg]: //
 
'-'-strand:
3 genes, length ø 1527 bp, gc-content ø 0.458
 
tRNA:
32 genes, length ø 80 bp, gc-content ø 0.523
 
'+'-strand:
21 genes, length ø 81 bp, gc-content ø 0.515
 
'-'-strand:
11 genes, length ø 78 bp, gc-content ø 0.539
 
tmRNA:
1 genes, length ø 362 bp, gc-content ø 0.331
 
'+'-strand:
0 genes, length ø 0 bp, gc-content ø 0
Confidence [min/max/avg]: //
Coverage [min/max/avg]: //
 
'-'-strand:
1 genes, length ø 362 bp, gc-content ø 0.331
 

 
Genome featuresCDS:
1239 genes, length ø 893 bp, gc-content ø 0.285
 
'+'-strand:
713 genes, length ø 854 bp, gc-content ø 0.285
 
'-'-strand:
526 genes, length ø 947 bp, gc-content ø 0.285
 
ncRNA:
2 genes, length ø 194 bp, gc-content ø 0.423
 
'+'-strand:
2 genes, length ø 194 bp, gc-content ø 0.423
 
'-'-strand:
0 genes, length ø 0 bp, gc-content ø 0
 
pseudo:
137 genes, length ø 572 bp, gc-content ø 0.283
 
'+'-strand:
94 genes, length ø 591 bp, gc-content ø 0.285
 
'-'-strand:
43 genes, length ø 530 bp, gc-content ø 0.28
 
rRNA:
3 genes, length ø 1527 bp, gc-content ø 0.458
 
'+'-strand:
0 genes, length ø 0 bp, gc-content ø 0
 
'-'-strand:
3 genes, length ø 1527 bp, gc-content ø 0.458
 
tRNA:
32 genes, length ø 80 bp, gc-content ø 0.523
 
'+'-strand:
21 genes, length ø 81 bp, gc-content ø 0.515
 
'-'-strand:
11 genes, length ø 78 bp, gc-content ø 0.539
 
tmRNA:
1 genes, length ø 362 bp, gc-content ø 0.331
 
'+'-strand:
0 genes, length ø 0 bp, gc-content ø 0
 
'-'-strand:
1 genes, length ø 362 bp, gc-content ø 0.331
 
COG categories 
Amino acid transport and metabolism [E]32
Carbohydrate transport and metabolism [G]45
Cell cycle control, mitosis and meiosis [D]46
Cell motility [N]71
Cell wall/membrane biogenesis [M]42
Chromatin structure and dynamics [B]0
Coenzyme transport and metabolism [H]12
Cytoskeleton [Z]0
Defense mechanisms [V]0
Energy production and conversion [C]21
Extracellular structures [W]0
Function unknown [S]45
General function prediction only [R]88
Inorganic ion transport and metabolism [P]26
Intracellular trafficking and secretion [U]0
Lipid transport and metabolism [I]15
NOT ANALYZED175
Nuclear structure [Y]0
Nucleotide transport and metabolism [F]24
Posttranslational modification, protein turnover, chaperones [O]29
RNA processing and modification [A]0
Replication, recombination and repair [L]65
Secondary metabolites biosynthesis, transport and catabolism [Q]10
Signal transduction mechanisms [T]13
Transcription [K]21
Translation, ribosomal structure and biogenesis [J]113
Unclassified [-]544