SGB - The Spirochetes Genome Browser - Summary for Treponema denticola ATCC 35405.

Title

+ Borrelia afzelii, PKo

+ Borrelia burgdorferi ZS7, ZS7

+ Borrelia burgdorferi, B31

+ Borrelia duttonii Ly, Ly

+ Borrelia garinii High passage (300), PBi

+ Borrelia garinii, PBi

+ Borrelia hermsii DAH, DAH

+ Borrelia recurrentis A1, A1

+ Borrelia turicatae 91E135, 91E135

+ Leptospira biflexa serovar Patoc strain Patoc 1 (Ames), Patoc 1 (Ames)

+ Leptospira biflexa serovar Patoc strain Patoc 1 (Paris), Patoc 1 (Paris)

+ Leptospira borgpetersenii serovar Hardjo-bovis JB197, JB197

+ Leptospira borgpetersenii serovar Hardjo-bovis L550, L550

+ Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130

+ Leptospira interrogans serovar lai str. 56601

+ Treponema denticola ATCC 35405

+ Treponema pallidum

+ Treponema pallidum subsp. pallidum SS14, SS14

+ COG functional categories

+ (Clickable) linear whole genome views

+ Horizontal gene transfer (predicted by SIGI-HMM)

+ Sequence retrieval

+ Advanced search

+ Sequence similarity search

+ Best bidirectional hits (protein-based analysis)

+ Gene core sets (protein-based analysis)

+ Gene partnerships (DNA-based analysis)

+ Protein variations (protein-based analysis)

+ Synteny analysis (protein-based analysis)

+ Gene conservation (protein-based analysis)

+ Codon and amino acid usages (DNA- and protein-based analysis)

+ Alignments of whole reference and target genomic elements (DNA-based analysis)

Summary for Treponema denticola ATCC 35405.

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chr: chromosome(s), pl: plasmid(s), seg: segment(s)

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	Treponema denticola ATCC 35405
Genomic elements	1 chromosomes(s) Hide details chromosome length: 2843201 bp gc-content (intragenic): 0.372464 % CDS: 2767 genes, length ø 942 bp, gc-content ø 0.372 '+'-strand: 1314 genes, length ø 943 bp, gc-content ø 0.373 '-'-strand: 1453 genes, length ø 941 bp, gc-content ø 0.371
Genome features	CDS: 2767 genes, length ø 942 bp, gc-content ø 0.372 '+'-strand: 1314 genes, length ø 943 bp, gc-content ø 0.373 '-'-strand: 1453 genes, length ø 941 bp, gc-content ø 0.371
COG categories
Amino acid transport and metabolism [E]	160
Carbohydrate transport and metabolism [G]	108
Cell cycle control, mitosis and meiosis [D]	39
Cell motility [N]	81
Cell wall/membrane biogenesis [M]	132
Chromatin structure and dynamics [B]	1
Coenzyme transport and metabolism [H]	64
Cytoskeleton [Z]	3
Defense mechanisms [V]	109
Energy production and conversion [C]	84
Extracellular structures [W]	1
Function unknown [S]	220
General function prediction only [R]	328
Inorganic ion transport and metabolism [P]	130
Intracellular trafficking and secretion [U]	46
Lipid transport and metabolism [I]	47
NOT ANALYZED	0
Nuclear structure [Y]	0
Nucleotide transport and metabolism [F]	51
Posttranslational modification, protein turnover, chaperones [O]	86
RNA processing and modification [A]	0
Replication, recombination and repair [L]	135
Secondary metabolites biosynthesis, transport and catabolism [Q]	17
Signal transduction mechanisms [T]	105
Transcription [K]	130
Translation, ribosomal structure and biogenesis [J]	164
Unclassified [-]	769