SGB - The Spirochetes Genome Browser - Summary for

Title

+ Borrelia afzelii, PKo

+ Borrelia burgdorferi ZS7, ZS7

+ Borrelia burgdorferi, B31

+ Borrelia duttonii Ly, Ly

+ Borrelia garinii High passage (300), PBi

+ Borrelia garinii, PBi

+ Borrelia hermsii DAH, DAH

+ Borrelia recurrentis A1, A1

+ Borrelia turicatae 91E135, 91E135

+ Leptospira biflexa serovar Patoc strain Patoc 1 (Ames), Patoc 1 (Ames)

+ Leptospira biflexa serovar Patoc strain Patoc 1 (Paris), Patoc 1 (Paris)

+ Leptospira borgpetersenii serovar Hardjo-bovis JB197, JB197

+ Leptospira borgpetersenii serovar Hardjo-bovis L550, L550

+ Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130

+ Leptospira interrogans serovar lai str. 56601

+ Treponema denticola ATCC 35405

+ Treponema pallidum

+ Treponema pallidum subsp. pallidum SS14, SS14

+ COG functional categories

+ (Clickable) linear whole genome views

+ Horizontal gene transfer (predicted by SIGI-HMM)

+ Sequence retrieval

+ Advanced search

+ Sequence similarity search

+ Best bidirectional hits (protein-based analysis)

+ Gene core sets (protein-based analysis)

+ Gene partnerships (DNA-based analysis)

+ Protein variations (protein-based analysis)

+ Synteny analysis (protein-based analysis)

+ Gene conservation (protein-based analysis)

+ Codon and amino acid usages (DNA- and protein-based analysis)

+ Alignments of whole reference and target genomic elements (DNA-based analysis)

Summary for

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chr: chromosome(s), pl: plasmid(s), seg: segment(s)

Free access


Genomic elements
Genome features
COG categories
Amino acid transport and metabolism [E]
Carbohydrate transport and metabolism [G]
Cell cycle control, mitosis and meiosis [D]
Cell motility [N]
Cell wall/membrane biogenesis [M]
Chromatin structure and dynamics [B]
Coenzyme transport and metabolism [H]
Cytoskeleton [Z]
Defense mechanisms [V]
Energy production and conversion [C]
Extracellular structures [W]
Function unknown [S]
General function prediction only [R]
Inorganic ion transport and metabolism [P]
Intracellular trafficking and secretion [U]
Lipid transport and metabolism [I]
NOT ANALYZED
Nuclear structure [Y]
Nucleotide transport and metabolism [F]
Posttranslational modification, protein turnover, chaperones [O]
RNA processing and modification [A]
Replication, recombination and repair [L]
Secondary metabolites biosynthesis, transport and catabolism [Q]
Signal transduction mechanisms [T]
Transcription [K]
Translation, ribosomal structure and biogenesis [J]
Unclassified [-]